GCAI.bias: Guided Correction Approach for Inherited bias (GCAI.bias)

Many inherited biases and effects exists in RNA-seq due to both biological and technical effects. We observed the biological variance of testing target transcripts can influence the yield of sequencing reads, which might indicate a resource competition existing in RNA-seq. We developed this package to capture the bias depending on local sequence and perform the correction of this type of bias by borrowing information from spike-in measurement.

AuthorGuoshuai Cai
Date of publication2014-07-16 01:07:26
MaintainerGuoshuai Cai <GCAI.bioinfo@gmail.com>
LicenseGPL (>= 2)

View on CRAN

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.