Description Usage Arguments Details Value Author(s) References See Also Examples
To estimating the coefficients by fitting the linear model
1 | lm.estimate(obj.train, fit.cut.train = 5)
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obj.train |
an object of training data generated from |
fit.cut.train |
the minimum counts of the data points used for model fitting, the default for spike-in training dataset is 5. |
It models the influence on the local sequence from the dissimilarity of spike-in transcripts measurement. The region of positions around hexamer primers can be defined by the variable "word".
a 1-column matrix of coefficients will be returned.
Guoshuai Cai
Cai G, RNA-SEQUENCING APPLICATIONS: GENE EXPRESSION QUANTIFICATION AND METHYLATOR PHENOTYPE IDENTIFICATION, Ph.D. Thesis, 2013
index.preprocess
,counts.preprocess
1 2 3 4 5 6 7 8 9 10 | word<-81
data(train.dat.seq)
data(train.dat.counts)
train.index<-index.preprocess(train.dat.seq,word)
obj.train<-counts.preprocess(train.dat.counts)
obj.train[["index"]]<-train.index
coe.lm<-lm.estimate(obj.train,fit.cut.train=5)
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