Description Usage Format References Examples
Index S3 class contains two objects: a 2-dimension matrix with nucleotides as row names and positions as column names and a flatted one with 1-dimension combinations of nucleotides and positions.
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The format is:
List of 2
$ mat : num [1:4, 1:81] 0 0 0 0 0 0 0 0 0 0 ...
..- attr(*, "dimnames")=List of 2
.. ..$ : chr [1:4] "A" "T" "C" "G"
.. ..$ : chr [1:81] "-40" "-39" "-38" "-37" ...
$ flat: chr [1:324, 1:3] "1" "2" "3" "4" ...
Cai G, RNA-SEQUENCING APPLICATIONS: GENE EXPRESSION QUANTIFICATION AND METHYLATOR PHENOTYPE IDENTIFICATION, Ph.D. Thesis, 2013
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