obj.index: Index S3 Class

In GCAI.bias: Guided Correction Approach for Inherited bias (GCAI.bias)

Description

Index S3 class contains two objects: a 2-dimension matrix with nucleotides as row names and positions as column names and a flatted one with 1-dimension combinations of nucleotides and positions.

Usage

data(obj.index)

Format

The format is:

List of 2

$ mat : num [1:4, 1:81] 0 0 0 0 0 0 0 0 0 0 ...

..- attr(*, "dimnames")=List of 2

.. ..$ : chr [1:4] "A" "T" "C" "G"

.. ..$ : chr [1:81] "-40" "-39" "-38" "-37" ...

$ flat: chr [1:324, 1:3] "1" "2" "3" "4" ...

References

Cai G, RNA-SEQUENCING APPLICATIONS: GENE EXPRESSION QUANTIFICATION AND METHYLATOR PHENOTYPE IDENTIFICATION, Ph.D. Thesis, 2013

Examples

data(obj.index)

GCAI.bias documentation built on May 1, 2019, 8:18 p.m.