Description Usage Arguments Details Value Author(s) References See Also Examples
Pairwise comparison matrix of the original and corrected measurements
1 | corplot(mat)
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mat |
a data matrix from |
Pairwise plots of sequencing reads mapped to each base pair on the log10 scale will be shown in the bottom panel; Pairwise Pearson correlation coefficients calculated on data points larger than 1 will be shown in the top panel.
a plot produced on the current graphic device
Guoshuai Cai
Cai G, RNA-SEQUENCING APPLICATIONS: GENE EXPRESSION QUANTIFICATION AND METHYLATOR PHENOTYPE IDENTIFICATION, Ph.D. Thesis, 2013
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 | word<-81
data(obj.index)
data(train.dat.seq)
data(train.dat.counts)
data(test.dat.seq)
data(test.dat.counts)
#train
train.index<-index.preprocess(train.dat.seq,word)
obj.train<-counts.preprocess(train.dat.counts)
obj.train[["index"]]<-train.index
coe.lm<-lm.estimate(obj.train,fit.cut.train=5)
#test
test.index<-index.preprocess(test.dat.seq,word)
obj.test<-counts.preprocess(test.dat.counts)
obj.test[["index"]]<-test.index
test.corrected<-correct.guided(coe.lm,obj.test)
corplot(test.corrected)
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