train.dat.counts: Training Counts Dataset

In GCAI.bias: Guided Correction Approach for Inherited bias (GCAI.bias)

Description

An example, a data frame of reads counts of training samples

Usage

data(train.dat.counts)

Format

A data frame with 5203 observations on the following 6 variables.

gene

a factor with levels ERCC-00002 ERCC-00003 ERCC-00007 ERCC-00009 ERCC-00012 ERCC-00013 ERCC-00014 ERCC-00016 ERCC-00017 ERCC-00018 ERCC-00019 ERCC-00022 ERCC-00023 ERCC-00024 ERCC-00025 ERCC-00028 ERCC-00031 ERCC-00033 ERCC-00034 ERCC-00035 ERCC-00039 ERCC-00040 ERCC-00041 ERCC-00042 ERCC-00044 ERCC-00048 ERCC-00054 ERCC-00058 ERCC-00061 ERCC-00079 ERCC-00171

pos

a numeric vector

code_strand

a factor with levels +

seq_strand

a factor with levels S

GSM516589_run32_s_2_ERCC_map_Pos

a numeric vector

GSM517059_run29_s_1_ERCC_map_Pos

a numeric vector

References

Cai G, RNA-SEQUENCING APPLICATIONS: GENE EXPRESSION QUANTIFICATION AND METHYLATOR PHENOTYPE IDENTIFICATION, Ph.D. Thesis, 2013

Examples

data(train.dat.counts)

GCAI.bias documentation built on May 1, 2019, 8:18 p.m.