Plot the trace of allele frequencies in present time population and optionnaly print it.

Description

Plot of allele frequencies in present time populations number ipop, for allele iall of locus iloc

Usage

1
PlotFreq(path.mcmc,ipop,iloc,iall,printit=FALSE,path)

Arguments

path.mcmc

Path to output files directory

ipop

Integer number : index of population

iloc

Integer number : index of locus

iall

Integer number : index of allele. If MCMC was launched with option filter.null.alleles=TRUE, an extra fictive allele standing for putative null alleles is created. It estimated frequency can be also plotted. If there is say, 5 alleles at a locus, the estimated frequency of null alleles can be seen invoking PlotFreq with iall=6.

printit

Logical : if TRUE, figures are also printed

path

Character : Path to directory where figures should be printed

Author(s)

Gilles Guillot

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