Description Usage Arguments Value Author(s) References See Also
Computes posterior probabilities of population membership for each pixel of the spatial domain.
1 2 | PostProcessChain(coordinates,
path.mcmc,nxdom, nydom,burnin)
|
coordinates |
Spatial coordinates of individuals. A matrix with 2 columns and one line per individual. |
path.mcmc |
Path to output files directory |
nxdom |
Number of pixel for discretization of the spatial domain in the horizontal direction |
nydom |
Number of pixel for discretization of the spatial domain in the vertical direction |
burnin |
Number of iterations of the chain to throw away.
WARNING : this argument should be given the number of stored
iterations (and not the number of computed iterations which differ
if |
Posterior probability of population membership for each pixel: |
They are
written in an ascii file called ‘proba.pop.membership.txt’.
Two first columns are coordinates of pixels then
one column per population (thus |
Posterior probability of population membership for each
individual: |
They are written in a file named
‘proba.pop.membership.indiv.txt’. One line per individuals and
|
Label of modal population for pixels and individuals: |
They are written in files named ‘modal.pop.txt’ and
‘modal.pop.indiv.txt’
respectively.
See the example section of function |
Gilles Guillot
G. Guillot, Estoup, A., Mortier, F. Cosson, J.F. A spatial statistical model for landscape genetics. Genetics, 170, 1261-1280, 2005.
G. Guillot, Mortier, F., Estoup, A. Geneland : A program for landscape genetics. Molecular Ecology Notes, 5, 712-715, 2005.
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