countToTpm_matrix: Convert count to Tpm
In GeoTcgaData: Processing various types of data on GEO and TCGA

countToTpm_matrix

R Documentation

Convert count to Tpm

Description

Convert count to Tpm

Usage

countToTpm_matrix(counts_matrix, keyType = "SYMBOL", gene_cov)

Arguments

`counts_matrix`	a matrix, colnames of counts_matrix are sample name, rownames of counts_matrix are gene symbols
`keyType`	keyType
`gene_cov`	gene_cov

Value

a matrix

Examples

lung_squ_count2 <- matrix(c(1,2,3,4,5,6,7,8,9),ncol=3)
rownames(lung_squ_count2) <- c("DISC1","TCOF1","SPPL3")
colnames(lung_squ_count2) <- c("sample1","sample2","sample3")
result <- countToTpm_matrix(lung_squ_count2, keyType = "SYMBOL", 
    gene_cov = gene_cov)

GeoTcgaData documentation built on Sept. 23, 2022, 9:05 a.m.