differential_cnv: Do chi-square test to find differential genes
In GeoTcgaData: Processing various types of data on GEO and TCGA

differential_cnv

R Documentation

Do chi-square test to find differential genes

Description

Do chi-square test to find differential genes

Usage

differential_cnv(rt)

Arguments

`rt`	result of prepare_chi()

Value

a matrix

Examples

jieguo3 <- matrix(c(-1.09150,-1.47120,-0.87050,-0.50880,
                    -0.50880,2.0,2.0,2.0,2.0,2.0,2.601962,2.621332,2.621332,
                    2.621332,2.621332,2.0,2.0,2.0,2.0,2.0,2.0,2.0,2.0,
                    2.0,2.0,2.0,2.0,2.0,2.0,2.0),nrow=5)
rownames(jieguo3) <- c("AJAP1","FHAD1","CLCNKB","CROCCP2","AL137798.3")
colnames(jieguo3) <- c("TCGA-DD-A4NS-10A-01D-A30U-01","TCGA-ED-A82E-01A-11D-A34Y-01",
    "TCGA-WQ-A9G7-01A-11D-A36W-01","TCGA-DD-AADN-01A-11D-A40Q-01",
    "TCGA-ZS-A9CD-10A-01D-A36Z-01","TCGA-DD-A1EB-11A-11D-A12Y-01")
rt <- prepare_chi(jieguo3)
chiResult <- differential_cnv(rt)

GeoTcgaData documentation built on Sept. 23, 2022, 9:05 a.m.