diff_RNA_ucsc: Do difference analysis of RNA-seq data downloaded from ucsc

In GeoTcgaData: Processing various types of data on GEO and TCGA

Do difference analysis of RNA-seq data downloaded from ucsc

Description

Do difference analysis of RNA-seq data downloaded from ucsc

Usage

diff_RNA_ucsc(ucscfile, ...)

Arguments

ucscfile	a dataframe or numeric matrix of ucsc RNA-seq data
...	additional parameters

Examples

## Not run: 
ucscfile <- data.table::fread("TCGA-BRCA.htseq_counts.tsv.gz")
group <- sample(c("grp1", "grp2"), ncol(ucscfile) - 1, replace = TRUE)
result <- diff_RNA_ucsc(ucscfile, group = group)

## End(Not run)

GeoTcgaData documentation built on Sept. 23, 2022, 9:05 a.m.