Files in GeoTcgaData
Processing various types of data on GEO and TCGA
MD5
README.md
NAMESPACE
DESCRIPTION
R/sysdata.rda
R/CNV.R
R/Merge_methylation.R
R/calculate_mean_profile.R
R/RNA_seq.R
R/kegg_diff_gene.R
R/prepareChi.r
R/rep.R
R/data.R
R/Proce_cli.R
R/calculate_mean_module.R
R/ann_merge.r
R/SNP.R
R/fpkm_count_conversion.r
R/TCGA_id_conversion.R
R/zzz.R
R/arrayDiff.R
R/id_conversion_all.r
inst/doc/GeoTcgaData.html
inst/doc/GeoTcgaData.R
inst/doc/GeoTcgaData.Rmd
inst/extdata/build_data.R
inst/extdata/tcga_cli/ats.org.TCGA-2Y-A9GS.xml
inst/extdata/tcga_cli/at.orl.TCGA-2V-A95S.xml
inst/extdata/tcga_cli/ati.org.TCGA-2Y-A9GT.xml
inst/extdata/methy/0ae7/jhu-usc.H.8.l.I.TCGA-30-1714-01A-02D-0563-05.g.txt
inst/extdata/methy/0ae7/logs/file3.parcel
inst/extdata/methy/0b32/jhu-usc.e.H.5.l.TCGA-13-1510-01A-02D-0475-05.gdc_hg38.txt
inst/extdata/methy/0b32/logs/file4.parcel
inst/extdata/methy/0a0b4/jhu-usc.e.H.4.lvl-3.TCGA-13-1405-01A-01D-0460-05.g.txt
inst/extdata/methy/0a0b4/logs/file1.parcel
inst/extdata/methy/0a6b/jhu-usc.e.H.10.lvl-3.TCGA-30-1880-01A-01D-0652-05.g.txt
inst/extdata/methy/0a6b/logs/file2.parcel
inst/extdata/cnv/00f9/MINAE_p_TCGA_200_202_203_S.txt
inst/extdata/cnv/0a01/KNELT_p_TCGA_b123_131_S.txt
inst/extdata/cnv/00de3/HONGS_p_TCGAb3_75_76_77_NSP_G.txt
inst/extdata/cnv/00e8/MICHE_p_TCGAb_428_429_NS.txt
build/vignette.rds
vignettes/GeoTcgaData.Rmd
data/ventricle.rda
data/GSE66705_sample2.rda
data/geneExpress.rda
data/module.rda
data/profile.rda
data/gene_cov.rda
data/kegg_liver.rda
man/arrayDiff.Rd
man/fpkmToTpm_matrix.Rd
man/countToFpkm_matrix.Rd
man/rep1.Rd
man/id_ava.Rd
man/methyDiff.Rd
man/methyDiff_ucsc.Rd
man/cal_mean_module.Rd
man/ventricle.Rd
man/differential_cnv.Rd
man/tcga_cli_deal.Rd
man/classify_sample.Rd
man/kegg_liver.Rd
man/profile.Rd
man/module.Rd
man/id_conversion.Rd
man/id_conversion_vector.Rd
man/diff_RNA_ucsc.Rd
man/prepare_chi.Rd
man/geneExpress.Rd
man/diff_SNP_tcga.Rd
man/diff_CNV.Rd
man/gene_ave.Rd
man/Merge_methy_tcga.Rd
man/gene_cov.Rd
man/diff_SNP.Rd
man/Diff_limma.Rd
man/GSE66705_sample2.Rd
man/diff_gene.Rd
man/rep2.Rd
man/countToTpm_matrix.Rd
man/diff_RNA.Rd
