prepare_chi: Preparer file for chi-square test
In GeoTcgaData: Processing various types of data on GEO and TCGA

prepare_chi

R Documentation

Preparer file for chi-square test

Description

Preparer file for chi-square test

Usage

prepare_chi(cnv)

Arguments

cnv

result of ann_merge()

Value

a matrix

Examples

cnv <- matrix(c(-1.09150,-1.47120,-0.87050,-0.50880,
    -0.50880,2.0,2.0,2.0,2.0,2.0,2.601962,2.621332,2.621332,
    2.621332,2.621332,2.0,2.0,2.0,2.0,2.0,2.0,2.0,2.0,
    2.0,2.0,2.0,2.0,2.0,2.0,2.0),nrow=5)
cnv <- as.data.frame(cnv)
rownames(cnv) <- c("AJAP1","FHAD1","CLCNKB","CROCCP2","AL137798.3")
colnames(cnv) <- c("TCGA-DD-A4NS-10A-01D-A30U-01","TCGA-ED-A82E-01A-11D-A34Y-01",
    "TCGA-WQ-A9G7-01A-11D-A36W-01","TCGA-DD-AADN-01A-11D-A40Q-01",
    "TCGA-ZS-A9CD-10A-01D-A36Z-01","TCGA-DD-A1EB-11A-11D-A12Y-01")
cnv_chi_file <- prepare_chi(cnv)

GeoTcgaData documentation built on Sept. 23, 2022, 9:05 a.m.