create_overlap_distribution_dataset: Show overlap distribution data

In HaDeX2: Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data

Show overlap distribution data

Description

Generates the data of frequency of overlap of each amino in the protein sequence.

Usage

create_overlap_distribution_dataset(
  dat,
  protein = dat[["Protein"]][1],
  state = dat[["State"]][1],
  start = min(dat[["Start"]]),
  end = max(dat[["End"]]),
  protein_sequence = reconstruct_sequence(dat)
)

Arguments

dat	data imported by the read_hdx function.
protein	chosen protein.
state	biological state for chosen protein.
start	start position of chosen protein.
end	end position of chosen protein.
protein_sequence	data produced by reconstruct_sequence function.

Details

This data frame presents how many times (by how many peptides) a amino position in protein sequence is covered. This data is available in the GUI.

Value

a data.frame object.

See Also

read_hdx reconstruct_sequence

Examples

create_overlap_distribution_dataset(alpha_dat)

HaDeX2 documentation built on Feb. 9, 2026, 5:07 p.m.