plot_aggregated_uptake: Plots aggregated uptake

In HaDeX2: Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data

Plots aggregated uptake

Description

Plots aggregated uptake

Usage

plot_aggregated_uptake(
  aggregated_dat,
  fractional = TRUE,
  theoretical = FALSE,
  time_100 = max(unique(aggregated_dat[["Exposure"]])),
  panels = FALSE,
  interactive = FALSE
)

Arguments

aggregated_dat	aggregated differential uptake data as calculated by create_aggregated_uptake_dataset
fractional	logical, determines if values are fractional
theoretical	logical, determines if values are theoretical
time_100	maximal exchange control time point of measurement [min]
panels	logical, indicator if plot should be divided into panels or not
interactive	logical, whether plot should have an interactive layer created with with ggiraph, which would add tooltips to the plot in an interactive display (HTML/Markdown documents or shiny app).

Value

a ggplot object

Examples

# disabled due to long execution time 

kin_dat <- create_uptake_dataset(alpha_dat, states = "Alpha_KSCN")
aggregated_dat <- create_aggregated_uptake_dataset(kin_dat)
plot_aggregated_uptake(aggregated_dat, panels = FALSE)
plot_aggregated_uptake(aggregated_dat, fractional = FALSE, panels = FALSE)
plot_aggregated_uptake(aggregated_dat, fractional = FALSE, theoretical = TRUE, panels = TRUE)

HaDeX2 documentation built on Feb. 9, 2026, 5:07 p.m.