plot_amino_distribution: generate_amino_distribution

In HaDeX2: Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data

generate_amino_distribution

Description

Generates amino distribution based on the protein sequence and shows if the amino acid is hydrophobic or hydrophylic.

Usage

plot_amino_distribution(
  position_in_sequence,
  hydro_properties,
  protein,
  charge_colors,
  interactive = getOption("hadex_use_interactive_plots")
)

Arguments

position_in_sequence	custom format
hydro_properties	data with hydrophobic properties
protein	chosen protein
charge_colors	vector of desired colors
interactive	logical, whether plot should have an interactive layer created with with ggiraph, which would add tooltips to the plot in an interactive display (HTML/Markdown documents or shiny app).

Details

The data for this function is not packaged yet.

Value

a ggplot object.

HaDeX2 documentation built on Feb. 9, 2026, 5:07 p.m.