API for HaDeX2
Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data
| Global functions | |
|---|---|
| .onAttach | Source code |
| .onLoad | Source code |
| HaDeX2 | Man page |
| HaDeX2-package | Man page |
| HaDeX_GUI | Man page Source code |
| HaDeXify | Man page Source code |
| add_stat_dependency | Man page Source code |
| alpha_dat | Man page |
| assert_0_1 | Source code |
| assert_start_end | Source code |
| assert_time | Source code |
| assert_time_t | Source code |
| calculate_MHP | Man page |
| calculate_aggregated_diff_uptake | Man page Source code |
| calculate_aggregated_test_results | Man page Source code |
| calculate_aggregated_uptake | Man page Source code |
| calculate_auc | Man page Source code |
| calculate_back_exchange | Man page Source code |
| calculate_confidence_limit_values | Man page Source code |
| calculate_diff_uptake | Man page Source code |
| calculate_exp_masses | Man page |
| calculate_exp_masses_per_replicate | Man page Source code |
| calculate_kinetics | Man page Source code |
| calculate_p_value | Man page Source code |
| calculate_peptide_kinetics | Man page Source code |
| calculate_state_uptake | Man page Source code |
| create_aggregated_diff_uptake_dataset | Man page Source code |
| create_aggregated_uptake_dataset | Man page Source code |
| create_control_dataset | Man page Source code |
| create_diff_uptake_dataset | Man page Source code |
| create_kinetic_dataset | Man page Source code |
| create_overlap_distribution_dataset | Man page |
| create_p_diff_uptake_dataset | Man page Source code |
| create_p_diff_uptake_dataset_with_confidence | Man page Source code |
| create_quality_control_dataset | Man page Source code |
| create_replicate_dataset | Man page |
| create_state_comparison_dataset | Man page Source code |
| create_state_uptake_dataset | Man page Source code |
| create_uptake_dataset | Man page Source code |
| get_n_replicates | Man page Source code |
| get_peptide_sequence | Man page |
| get_protein_coverage | Man page Source code |
| get_protein_redundancy | Man page Source code |
| get_replicate_list_sd | Man page |
| get_residue_positions | Man page Source code |
| get_structure_color | Man page Source code |
| get_uptake_error_label | Source code |
| get_uptake_error_name | Source code |
| get_uptake_label | Source code |
| get_uptake_name | Source code |
| handle_missing_GUI | Source code |
| hdx_data | Man page Source code |
| install_GUI | Man page Source code |
| is_GUI_installed | Man page Source code |
| markdown_acknowdlegments | Source code |
| markdown_citation_v1 | Source code |
| markdown_contact | Source code |
| markdown_description | Source code |
| markdown_funding | Source code |
| markdown_links | Source code |
| markown_citation_v2 | Source code |
| new_hdx_data | Man page Source code |
| plot_aggregated_differential_uptake | Man page Source code |
| plot_aggregated_uptake | Man page Source code |
| plot_aggregated_uptake_structure | Man page Source code |
| plot_amino_distribution | Man page Source code |
| plot_butterfly | Man page Source code |
| plot_chiclet | Man page Source code |
| plot_coverage | Man page Source code |
| plot_coverage_heatmap | Man page Source code |
| plot_differential | Man page Source code |
| plot_differential_butterfly | Man page Source code |
| plot_differential_chiclet | Man page Source code |
| plot_differential_uptake_curve | Man page Source code |
| plot_manhattan | Man page Source code |
| plot_overlap | Man page |
| plot_overlap_distribution | Man page |
| plot_peptide_charge_measurement | Man page |
| plot_peptide_mass_measurement | Man page Source code |
| plot_position_frequency | Man page Source code |
| plot_quality_control | Man page Source code |
| plot_replicate_histogram | Man page |
| plot_replicate_mass_uptake | Man page Source code |
| plot_state_comparison | Man page Source code |
| plot_uncertainty | Man page Source code |
| plot_uptake_curve | Man page Source code |
| plot_volcano | Man page Source code |
| prepare_hdxviewer_export | Man page Source code |
| read_hdx | Man page Source code |
| reconstruct_sequence | Man page Source code |
| show_aggregated_uptake_data | Man page Source code |
| show_coverage_heatmap_data | Man page Source code |
| show_diff_uptake_data | Man page Source code |
| show_diff_uptake_data_confidence | Man page |
| show_overlap_data | Man page Source code |
| show_p_diff_uptake_data | Man page |
| show_peptide_charge_measurement | Man page |
| show_peptide_mass_measurement | Man page Source code |
| show_quality_control_data | Man page Source code |
| show_replicate_histogram_data | Man page |
| show_summary_data | Man page |
| show_uc_data | Man page Source code |
| show_uptake_data | Man page Source code |
| transform_examiner | Source code |
| update_hdexaminer_file | Man page Source code |
| upgrade_2_to_3 | Source code |
| validate_hdx_data | Man page Source code |
