R/markdown_texts.R

In HaDeX2: Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data

markdown_funding <- function(){

  "This work is supported by:
  * Foundation of Polish Science (TEAM TECH CORE FACILITY/2016-2/2 *Mass Spectrometry of Biopharmaceuticals - improved methodologies for qualitative, quantitative and structural characterization of drugs, proteinaceous drug targets and diagnostic molecules)*
  * Narodowe Centrum Nauki (Preludium Bis 1 2019/35/O/NZ2/03745 Wysokorozdzielcza analiza danych z eksperymentow wymiany proton-deuter monitorowanych spektrometria mas)
  * Narodowa Agencja Wymiany Akademickiej 
  
  "
  
}

markdown_citation_v1 <- function(){
  
  "Puchala, W., Burdukiewicz, M., Kistowski, M., Dabrowska, K.A., Badaczewska-Dawid, A.E., Cysewski, D., and Dadlez, M. (2020). HaDeX: an R package and web-server for analysis of data from hydrogen-deuterium exchange mass spectrometry experiments. Bioinformatics 36, 4516-4518 (10.1093/bioinformatics/btaa587)."
  
}

markown_citation_v2 <- function(){
  
  "Puchala W., ..."
  
}

markdown_description <- function(){
  
  "HaDeX is ..."
  
}

markdown_links <- function(){
  
  "## Important links
  
  * documentation
  * (package repository)[https://github.com/hadexversum/HaDeX]
  * standalone software
  
  
  "
  
}

markdown_acknowdlegments <- function(){
  
  "## Acknowledgements
  
  We would like to thank following people, whose work inspired us to make HaDeX better:
  
  * David Weis, for his work on uncertainty of propagation.
  * HDeXplosion team, for introducing chiclet plots to us.
  * Julien Marcoux, for his valuable insight.
  * Manhattan plot team, for an idea for new visulization type. 
  
  "
}

markdown_contact <- function(){
  
  "## Contact
  
  Best way to contact as is through the HaDeX repository. Feel free to open an issue or contact the contributors directly.
  You can also email us on hadex@ibb.waw.pl.
  
  "
  
}