plot_butterfly: Butterfly deuterium uptake plot

In HaDeX2: Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data

Butterfly deuterium uptake plot

Description

Butterfly plot of deuterium uptake values in time for one biological state.

Usage

plot_butterfly(
  uptake_dat,
  theoretical = FALSE,
  fractional = FALSE,
  uncertainty_type = "ribbon",
  interactive = getOption("hadex_use_interactive_plots")
)

Arguments

uptake_dat	data produced by create_state_uptake_dataset function.
theoretical	logical, determines if values are theoretical.
fractional	logical, determines if values are fractional.
uncertainty_type	type of presenting uncertainty, possible values: "ribbon", "bars" or "bars + line".
interactive	logical, whether plot should have an interactive layer created with with ggiraph, which would add tooltips to the plot in an interactive display (HTML/Markdown documents or shiny app).

Details

Function plot_butterfly generates butterfly plot based on provided data and parameters. On X-axis there is peptide ID. On the Y-axis there is deuterium uptake in chosen form. Data from multiple time points of measurement is presented.

Value

a ggplot object.

See Also

create_state_uptake_dataset

Examples

state_uptake_dat <- create_state_uptake_dataset(alpha_dat)
plot_butterfly(state_uptake_dat)

HaDeX2 documentation built on Feb. 9, 2026, 5:07 p.m.