show_overlap_data: Show data on peptide overlap

In HaDeX2: Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data

Show data on peptide overlap

Description

Presents peptide overlap on protein sequence data, based on the supplied parameters.

Usage

show_overlap_data(
  dat,
  protein = dat[["Protein"]][1],
  state = dat[["State"]][1],
  start = min(dat[["Start"]]),
  end = max(dat[["End"]])
)

Arguments

dat	data imported by the read_hdx function.
protein	chosen protein.
state	biological state for chosen protein.
start	start position of chosen protein.
end	end position of chosen protein.

Details

The data frame presents all the peptides in given state, with its start and end position on the protein sequence. This data is available in the GUI.

Value

a data.frame object.

See Also

read_hdx plot_overlap

Examples

show_overlap_data(alpha_dat)

HaDeX2 documentation built on Feb. 9, 2026, 5:07 p.m.