IDSpatialStats: Estimate Global Clustering in Infectious Disease

Implements various novel and standard clustering statistics and other analyses useful for understanding the spread of infectious disease.

AuthorJustin Lessler <justin@jhu.edu>, Henrik Salje <hsalje@jhsph.edu>
Date of publication2016-09-20 00:59:43
MaintainerJustin Lessler <justin@jhu.edu>
LicenseGPL (>= 2)
Version0.2.2

View on CRAN

Man pages

DengueSimR01: Simulated dataset of dengue transmission with basic...

DengueSimR02: Simulated dataset of dengue cases with basic reproductive...

DengueSimRepresentative: Simulated dataset of dengue cases with representative...

get.pi: Generalized version of 'get.pi'

get.pi.bootstrap: Bootstrap 'get.pi' values.

get.pi.ci: Calculate bootstrapped confidence intervals for 'get.pi'...

get.pi.permute: get the null distribution of the 'get.pi' function

get.pi.typed: Optimized version of 'get.pi' for typed data.

get.pi.typed.bootstrap: runs bootstrapping on 'get.pi.typed'

get.pi.typed.permute: get the null distribution of the get.pi.typed function

get.tau: generalized version of 'get.tau'

get.tau.bootstrap: Bootstrap 'get.tau' values.

get.tau.ci: Bootstrap confidence interval for the 'get.tau' values

get.tau.permute: get the null distribution of the 'get.tau' function

get.tau.typed: Optimizewd version of 'get.tau' for typed data

get.tau.typed.bootstrap: runs bootstrapping for 'get.tau.typed'

get.tau.typed.permute: get the null distribution for the 'get.tau.typed' function

get.theta: Generalized version of 'get.theta'

get.theta.bootstrap: Bootstrap 'get.theta' values.

get.theta.ci: Calculate bootstrapped confidence intervals for 'get.theta'...

get.theta.permute: get the null distribution of the 'get.theta' function

get.theta.typed: Optimized version of 'get.theta' for typed data.

get.theta.typed.bootstrap: runs bootstrapping on 'get.theta.typed'

get.theta.typed.permute: get the null distribution of the get.theta.typed function

Files in this package

IDSpatialStats
IDSpatialStats/inst
IDSpatialStats/inst/tests
IDSpatialStats/inst/tests/test-gettaupermute.r
IDSpatialStats/inst/tests/test-getthetabootstrap.r
IDSpatialStats/inst/tests/test-gettaubootstrap.r
IDSpatialStats/inst/tests/test-gettheta.r
IDSpatialStats/inst/tests/test-getpibootstrap.r
IDSpatialStats/inst/tests/test-getpi.r
IDSpatialStats/inst/tests/test-gettau.r
IDSpatialStats/inst/tests/test-getpipermute.r
IDSpatialStats/inst/tests/test-getthetapermute.r
IDSpatialStats/src
IDSpatialStats/src/spatialfuncs.c
IDSpatialStats/NAMESPACE
IDSpatialStats/data
IDSpatialStats/data/DengueSimRepresentative.RData
IDSpatialStats/data/DengueSimulationR01.RData
IDSpatialStats/data/DengueSimulationR02.RData
IDSpatialStats/R
IDSpatialStats/R/spatialfuncs.r
IDSpatialStats/R/examples
IDSpatialStats/R/examples/get_tau_bootstrap.R IDSpatialStats/R/examples/get_tau_ci.R IDSpatialStats/R/examples/get_pi_bootstrap.R IDSpatialStats/R/examples/get_tau.R IDSpatialStats/R/examples/get_theta_ci.R IDSpatialStats/R/examples/get_theta_typed_permute.R IDSpatialStats/R/examples/get_tau_permute.R IDSpatialStats/R/examples/get_pi_typed_permute.R IDSpatialStats/R/examples/get_theta_bootstrap.R IDSpatialStats/R/examples/get_theta_permute.R IDSpatialStats/R/examples/get_theta_typed.R IDSpatialStats/R/examples/get_pi_permute.R IDSpatialStats/R/examples/get_theta.R IDSpatialStats/R/examples/get_tau_typed.R IDSpatialStats/R/examples/get_pi.R IDSpatialStats/R/examples/get_theta_typed_bootstrap.R IDSpatialStats/R/examples/get_pi_ci.R IDSpatialStats/R/examples/get_tau_typed_bootstrap.R IDSpatialStats/R/examples/get_tau_typed_permute.R IDSpatialStats/R/examples/get_pi_typed.R IDSpatialStats/R/examples/get_pi_typed_bootstrap.R
IDSpatialStats/MD5
IDSpatialStats/DESCRIPTION
IDSpatialStats/man
IDSpatialStats/man/get.pi.ci.Rd IDSpatialStats/man/get.theta.typed.permute.Rd IDSpatialStats/man/get.theta.permute.Rd IDSpatialStats/man/get.tau.Rd IDSpatialStats/man/get.theta.Rd IDSpatialStats/man/get.tau.bootstrap.Rd IDSpatialStats/man/get.tau.permute.Rd IDSpatialStats/man/get.theta.typed.bootstrap.Rd IDSpatialStats/man/get.theta.ci.Rd IDSpatialStats/man/get.theta.typed.Rd IDSpatialStats/man/get.tau.typed.permute.Rd IDSpatialStats/man/DengueSimRepresentative.Rd IDSpatialStats/man/get.pi.permute.Rd IDSpatialStats/man/get.tau.typed.bootstrap.Rd IDSpatialStats/man/get.tau.typed.Rd IDSpatialStats/man/get.pi.Rd IDSpatialStats/man/get.tau.ci.Rd IDSpatialStats/man/get.pi.typed.bootstrap.Rd IDSpatialStats/man/get.pi.typed.Rd IDSpatialStats/man/DengueSimR02.Rd IDSpatialStats/man/get.pi.typed.permute.Rd IDSpatialStats/man/get.pi.bootstrap.Rd IDSpatialStats/man/get.theta.bootstrap.Rd IDSpatialStats/man/DengueSimR01.Rd

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