IDSpatialStats: Estimate Global Clustering in Infectious Disease

Implements various novel and standard clustering statistics and other analyses useful for understanding the spread of infectious disease.

AuthorJustin Lessler <justin@jhu.edu>, Henrik Salje <hsalje@jhsph.edu>
Date of publication2016-09-20 00:59:43
MaintainerJustin Lessler <justin@jhu.edu>
LicenseGPL (>= 2)
Version0.2.2

View on CRAN

Man pages

DengueSimR01: Simulated dataset of dengue transmission with basic...

DengueSimR02: Simulated dataset of dengue cases with basic reproductive...

DengueSimRepresentative: Simulated dataset of dengue cases with representative...

get.pi: Generalized version of 'get.pi'

get.pi.bootstrap: Bootstrap 'get.pi' values.

get.pi.ci: Calculate bootstrapped confidence intervals for 'get.pi'...

get.pi.permute: get the null distribution of the 'get.pi' function

get.pi.typed: Optimized version of 'get.pi' for typed data.

get.pi.typed.bootstrap: runs bootstrapping on 'get.pi.typed'

get.pi.typed.permute: get the null distribution of the get.pi.typed function

get.tau: generalized version of 'get.tau'

get.tau.bootstrap: Bootstrap 'get.tau' values.

get.tau.ci: Bootstrap confidence interval for the 'get.tau' values

get.tau.permute: get the null distribution of the 'get.tau' function

get.tau.typed: Optimizewd version of 'get.tau' for typed data

get.tau.typed.bootstrap: runs bootstrapping for 'get.tau.typed'

get.tau.typed.permute: get the null distribution for the 'get.tau.typed' function

get.theta: Generalized version of 'get.theta'

get.theta.bootstrap: Bootstrap 'get.theta' values.

get.theta.ci: Calculate bootstrapped confidence intervals for 'get.theta'...

get.theta.permute: get the null distribution of the 'get.theta' function

get.theta.typed: Optimized version of 'get.theta' for typed data.

get.theta.typed.bootstrap: runs bootstrapping on 'get.theta.typed'

get.theta.typed.permute: get the null distribution of the get.theta.typed function

Functions

DengueSimR01 Man page
DengueSimR02 Man page
DengueSimRepresentative Man page
get.pi Man page
get.pi.bootstrap Man page
get.pi.ci Man page
get.pi.permute Man page
get.pi.typed Man page
get.pi.typed.bootstrap Man page
get.pi.typed.permute Man page
get.tau Man page
get.tau.bootstrap Man page
get.tau.ci Man page
get.tau.permute Man page
get.tau.typed Man page
get.tau.typed.bootstrap Man page
get.tau.typed.permute Man page
get.theta Man page
get.theta.bootstrap Man page
get.theta.ci Man page
get.theta.permute Man page
get.theta.typed Man page
get.theta.typed.bootstrap Man page
get.theta.typed.permute Man page

Files

IDSpatialStats
IDSpatialStats/inst
IDSpatialStats/inst/tests
IDSpatialStats/inst/tests/test-gettaupermute.r
IDSpatialStats/inst/tests/test-getthetabootstrap.r
IDSpatialStats/inst/tests/test-gettaubootstrap.r
IDSpatialStats/inst/tests/test-gettheta.r
IDSpatialStats/inst/tests/test-getpibootstrap.r
IDSpatialStats/inst/tests/test-getpi.r
IDSpatialStats/inst/tests/test-gettau.r
IDSpatialStats/inst/tests/test-getpipermute.r
IDSpatialStats/inst/tests/test-getthetapermute.r
IDSpatialStats/src
IDSpatialStats/src/spatialfuncs.c
IDSpatialStats/NAMESPACE
IDSpatialStats/data
IDSpatialStats/data/DengueSimRepresentative.RData
IDSpatialStats/data/DengueSimulationR01.RData
IDSpatialStats/data/DengueSimulationR02.RData
IDSpatialStats/R
IDSpatialStats/R/spatialfuncs.r
IDSpatialStats/R/examples
IDSpatialStats/R/examples/get_tau_bootstrap.R IDSpatialStats/R/examples/get_tau_ci.R IDSpatialStats/R/examples/get_pi_bootstrap.R IDSpatialStats/R/examples/get_tau.R IDSpatialStats/R/examples/get_theta_ci.R IDSpatialStats/R/examples/get_theta_typed_permute.R IDSpatialStats/R/examples/get_tau_permute.R IDSpatialStats/R/examples/get_pi_typed_permute.R IDSpatialStats/R/examples/get_theta_bootstrap.R IDSpatialStats/R/examples/get_theta_permute.R IDSpatialStats/R/examples/get_theta_typed.R IDSpatialStats/R/examples/get_pi_permute.R IDSpatialStats/R/examples/get_theta.R IDSpatialStats/R/examples/get_tau_typed.R IDSpatialStats/R/examples/get_pi.R IDSpatialStats/R/examples/get_theta_typed_bootstrap.R IDSpatialStats/R/examples/get_pi_ci.R IDSpatialStats/R/examples/get_tau_typed_bootstrap.R IDSpatialStats/R/examples/get_tau_typed_permute.R IDSpatialStats/R/examples/get_pi_typed.R IDSpatialStats/R/examples/get_pi_typed_bootstrap.R
IDSpatialStats/MD5
IDSpatialStats/DESCRIPTION
IDSpatialStats/man
IDSpatialStats/man/get.pi.ci.Rd IDSpatialStats/man/get.theta.typed.permute.Rd IDSpatialStats/man/get.theta.permute.Rd IDSpatialStats/man/get.tau.Rd IDSpatialStats/man/get.theta.Rd IDSpatialStats/man/get.tau.bootstrap.Rd IDSpatialStats/man/get.tau.permute.Rd IDSpatialStats/man/get.theta.typed.bootstrap.Rd IDSpatialStats/man/get.theta.ci.Rd IDSpatialStats/man/get.theta.typed.Rd IDSpatialStats/man/get.tau.typed.permute.Rd IDSpatialStats/man/DengueSimRepresentative.Rd IDSpatialStats/man/get.pi.permute.Rd IDSpatialStats/man/get.tau.typed.bootstrap.Rd IDSpatialStats/man/get.tau.typed.Rd IDSpatialStats/man/get.pi.Rd IDSpatialStats/man/get.tau.ci.Rd IDSpatialStats/man/get.pi.typed.bootstrap.Rd IDSpatialStats/man/get.pi.typed.Rd IDSpatialStats/man/DengueSimR02.Rd IDSpatialStats/man/get.pi.typed.permute.Rd IDSpatialStats/man/get.pi.bootstrap.Rd IDSpatialStats/man/get.theta.bootstrap.Rd IDSpatialStats/man/DengueSimR01.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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