IDSpatialStats: Estimate Global Clustering in Infectious Disease
Version 0.2.2

Implements various novel and standard clustering statistics and other analyses useful for understanding the spread of infectious disease.

AuthorJustin Lessler <justin@jhu.edu>, Henrik Salje <hsalje@jhsph.edu>
Date of publication2016-09-20 00:59:43
MaintainerJustin Lessler <justin@jhu.edu>
LicenseGPL (>= 2)
Version0.2.2
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("IDSpatialStats")

Popular man pages

DengueSimR01: Simulated dataset of dengue transmission with basic...
DengueSimRepresentative: Simulated dataset of dengue cases with representative...
get.pi.ci: Calculate bootstrapped confidence intervals for 'get.pi'...
get.tau: generalized version of 'get.tau'
get.tau.bootstrap: Bootstrap 'get.tau' values.
get.tau.permute: get the null distribution of the 'get.tau' function
get.theta.typed: Optimized version of 'get.theta' for typed data.
See all...

All man pages Function index File listing

Man pages

DengueSimR01: Simulated dataset of dengue transmission with basic...
DengueSimR02: Simulated dataset of dengue cases with basic reproductive...
DengueSimRepresentative: Simulated dataset of dengue cases with representative...
get.pi: Generalized version of 'get.pi'
get.pi.bootstrap: Bootstrap 'get.pi' values.
get.pi.ci: Calculate bootstrapped confidence intervals for 'get.pi'...
get.pi.permute: get the null distribution of the 'get.pi' function
get.pi.typed: Optimized version of 'get.pi' for typed data.
get.pi.typed.bootstrap: runs bootstrapping on 'get.pi.typed'
get.pi.typed.permute: get the null distribution of the get.pi.typed function
get.tau: generalized version of 'get.tau'
get.tau.bootstrap: Bootstrap 'get.tau' values.
get.tau.ci: Bootstrap confidence interval for the 'get.tau' values
get.tau.permute: get the null distribution of the 'get.tau' function
get.tau.typed: Optimizewd version of 'get.tau' for typed data
get.tau.typed.bootstrap: runs bootstrapping for 'get.tau.typed'
get.tau.typed.permute: get the null distribution for the 'get.tau.typed' function
get.theta: Generalized version of 'get.theta'
get.theta.bootstrap: Bootstrap 'get.theta' values.
get.theta.ci: Calculate bootstrapped confidence intervals for 'get.theta'...
get.theta.permute: get the null distribution of the 'get.theta' function
get.theta.typed: Optimized version of 'get.theta' for typed data.
get.theta.typed.bootstrap: runs bootstrapping on 'get.theta.typed'
get.theta.typed.permute: get the null distribution of the get.theta.typed function

Functions

Files

inst
inst/tests
inst/tests/test-gettaupermute.r
inst/tests/test-getthetabootstrap.r
inst/tests/test-gettaubootstrap.r
inst/tests/test-gettheta.r
inst/tests/test-getpibootstrap.r
inst/tests/test-getpi.r
inst/tests/test-gettau.r
inst/tests/test-getpipermute.r
inst/tests/test-getthetapermute.r
src
src/spatialfuncs.c
NAMESPACE
data
data/DengueSimRepresentative.RData
data/DengueSimulationR01.RData
data/DengueSimulationR02.RData
R
R/spatialfuncs.r
R/examples
R/examples/get_tau_bootstrap.R
R/examples/get_tau_ci.R
R/examples/get_pi_bootstrap.R
R/examples/get_tau.R
R/examples/get_theta_ci.R
R/examples/get_theta_typed_permute.R
R/examples/get_tau_permute.R
R/examples/get_pi_typed_permute.R
R/examples/get_theta_bootstrap.R
R/examples/get_theta_permute.R
R/examples/get_theta_typed.R
R/examples/get_pi_permute.R
R/examples/get_theta.R
R/examples/get_tau_typed.R
R/examples/get_pi.R
R/examples/get_theta_typed_bootstrap.R
R/examples/get_pi_ci.R
R/examples/get_tau_typed_bootstrap.R
R/examples/get_tau_typed_permute.R
R/examples/get_pi_typed.R
R/examples/get_pi_typed_bootstrap.R
MD5
DESCRIPTION
man
man/get.pi.ci.Rd
man/get.theta.typed.permute.Rd
man/get.theta.permute.Rd
man/get.tau.Rd
man/get.theta.Rd
man/get.tau.bootstrap.Rd
man/get.tau.permute.Rd
man/get.theta.typed.bootstrap.Rd
man/get.theta.ci.Rd
man/get.theta.typed.Rd
man/get.tau.typed.permute.Rd
man/DengueSimRepresentative.Rd
man/get.pi.permute.Rd
man/get.tau.typed.bootstrap.Rd
man/get.tau.typed.Rd
man/get.pi.Rd
man/get.tau.ci.Rd
man/get.pi.typed.bootstrap.Rd
man/get.pi.typed.Rd
man/DengueSimR02.Rd
man/get.pi.typed.permute.Rd
man/get.pi.bootstrap.Rd
man/get.theta.bootstrap.Rd
man/DengueSimR01.Rd
IDSpatialStats documentation built on May 19, 2017, 8:31 p.m.

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