DengueSimRepresentative: Simulated dataset of dengue cases with representative...
In IDSpatialStats: Estimate Global Clustering in Infectious Disease
DengueSimRepresentative R Documentation
Simulated dataset of dengue cases with representative underlying population
Description
Dataset simulated using an agent based model with a spatially heterogeneous population structure. Infectious agents were
introduced resulting in agent to agent transmission. The distance between successive cases in a transmission chain were
randomly drawn from a uniform distribution U(0,100). Each infectious agent resulted in transmissions to two other agents
after a delay of 15 days, reflecting the generation time of dengue. There are 11 transmission chains, each with a different
genotype. The genotypes are subdivided into four serotypes. 500 randomly selected individuals from the underlying population
also included.
Usage
DengueSimRepresentative
Format
Matrix with five columns representing the X and Y coordinates of infected individuals, the time of infection, the genotype
of the infecting pathogen and the serotype of the infecting pathogen. Individuals representative from the underlying population
have '-999'for time, genotype and serotype.
Author(s)
Justin Lessler and Henrik Salje
IDSpatialStats documentation built on Sept. 11, 2024, 5:14 p.m.
R Package Documentation
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| DengueSimRepresentative | R Documentation |
Simulated dataset of dengue cases with representative underlying population
Description
Dataset simulated using an agent based model with a spatially heterogeneous population structure. Infectious agents were introduced resulting in agent to agent transmission. The distance between successive cases in a transmission chain were randomly drawn from a uniform distribution U(0,100). Each infectious agent resulted in transmissions to two other agents after a delay of 15 days, reflecting the generation time of dengue. There are 11 transmission chains, each with a different genotype. The genotypes are subdivided into four serotypes. 500 randomly selected individuals from the underlying population also included.
Usage
DengueSimRepresentative
Format
Matrix with five columns representing the X and Y coordinates of infected individuals, the time of infection, the genotype of the infecting pathogen and the serotype of the infecting pathogen. Individuals representative from the underlying population have '-999'for time, genotype and serotype.
Author(s)
Justin Lessler and Henrik Salje
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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