DengueSimR01: Simulated dataset of dengue transmission with basic...

Description Usage Format Author(s)


Dataset simulated using an agent based model with a spatially heterogeneous population structure. Infectious agents were introduced resulting in agent to agent transmission. The distance between successive cases in a transmission chain were randomly drawn from a uniform distribution U(0,100). Each infectious agent resulted in a single transmission to another agent after a delay of 15 days, reflecting the generation time of dengue. There are 11 transmission chains, each with a different genotype. The genotypes are subdivided into four serotypes.




Matrix with five columns representing the X and Y coordinates of infected individuals, the time of infection, the genotype of the infecting pathogen and the serotype of the infecting pathogen.


Justin Lessler and Henrik Salje

IDSpatialStats documentation built on Nov. 16, 2019, 1:08 a.m.