API for ISOpureR
Deconvolution of Tumour Profiles

Global functions
ISOpure.calculate.tac Man page Source code
ISOpure.model_optimize.cg_code.rminimize Man page Source code
ISOpure.model_optimize.vv.vv_deriv_loglikelihood Man page Source code
ISOpure.model_optimize.vv.vv_loglikelihood Man page Source code
ISOpure.step1.CPE Man page Source code
ISOpure.step2.PPE Man page Source code
ISOpure.util.logsum Man page Source code
ISOpure.util.matlab_greater_than Man page Source code
ISOpure.util.matlab_less_than Man page Source code
ISOpure.util.matlab_log Man page Source code
ISOpure.util.repmat Man page Source code
ISOpureS1.model_core.compute_loglikelihood Man page Source code
ISOpureS1.model_core.new_model Man page Source code
ISOpureS1.model_core.optmodel Man page Source code
ISOpureS1.model_optimize.kappa.kappa_compute_loglikelihood Man page Source code
ISOpureS1.model_optimize.kappa.kappa_deriv_loglikelihood Man page Source code
ISOpureS1.model_optimize.kappa.kappa_loglikelihood Man page Source code
ISOpureS1.model_optimize.mm.mm_deriv_loglikelihood Man page Source code
ISOpureS1.model_optimize.mm.mm_loglikelihood Man page Source code
ISOpureS1.model_optimize.omega.omega_compute_loglikelihood Man page Source code
ISOpureS1.model_optimize.omega.omega_deriv_loglikelihood Man page Source code
ISOpureS1.model_optimize.omega.omega_loglikelihood Man page Source code
ISOpureS1.model_optimize.opt_kappa Man page Source code
ISOpureS1.model_optimize.opt_mm Man page Source code
ISOpureS1.model_optimize.opt_omega Man page Source code
ISOpureS1.model_optimize.opt_theta Man page Source code
ISOpureS1.model_optimize.opt_vv Man page Source code
ISOpureS1.model_optimize.theta.theta_deriv_loglikelihood Man page Source code
ISOpureS1.model_optimize.theta.theta_loglikelihood Man page Source code
ISOpureS1.model_optimize.vv.vv_compute_loglikelihood Man page Source code
ISOpureS2.model_core.compute_loglikelihood Man page Source code
ISOpureS2.model_core.new_model Man page Source code
ISOpureS2.model_core.optmodel Man page Source code
ISOpureS2.model_optimize.cc.cc_deriv_loglikelihood Man page Source code
ISOpureS2.model_optimize.cc.cc_loglikelihood Man page Source code
ISOpureS2.model_optimize.kappa.kappa_compute_loglikelihood Man page Source code
ISOpureS2.model_optimize.kappa.kappa_deriv_loglikelihood Man page Source code
ISOpureS2.model_optimize.kappa.kappa_loglikelihood Man page Source code
ISOpureS2.model_optimize.opt_cc Man page Source code
ISOpureS2.model_optimize.opt_kappa Man page Source code
ISOpureS2.model_optimize.opt_theta Man page Source code
ISOpureS2.model_optimize.opt_vv Man page Source code
ISOpureS2.model_optimize.theta.theta_deriv_loglikelihood Man page Source code
ISOpureS2.model_optimize.theta.theta_loglikelihood Man page Source code
ISOpureS2.model_optimize.vv.vv_compute_loglikelihood Man page Source code
rcppeigen_max_over_columns_or_rows Source code
ISOpureR documentation built on May 2, 2018, 1:04 a.m.