ISOpureS1.model_optimize.kappa.kappa_compute_loglikelihood: Compute loglikelihood relevant to kappa for step 1
In ISOpureR: Deconvolution of Tumour Profiles
Description
Usage
Arguments
Value
Author(s)
Description
Computes the part of the loglikelihood function relevant to optimizing kappa for step 1
Usage
1
ISOpureS1.model_optimize.kappa.kappa_compute_loglikelihood(kappa, tumordata, model)
Arguments
kappa
a scalar kappa, the strength parameter in the prior over the reference cancer profile
tumordata
a GxD matrix representing gene expression profiles of tumour samples
model
list containing all the parameters to be optimized
Value
The part of the loglikelihood function relevant to optimizing kappa
Author(s)
Gerald Quon, Catalina Anghel, Francis Nguyen
ISOpureR documentation built on May 11, 2019, 1:02 a.m.
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Description Usage Arguments Value Author(s)
Description
Computes the part of the loglikelihood function relevant to optimizing kappa for step 1
Usage
1 | ISOpureS1.model_optimize.kappa.kappa_compute_loglikelihood(kappa, tumordata, model)
|
Arguments
kappa |
a scalar kappa, the strength parameter in the prior over the reference cancer profile |
tumordata |
a GxD matrix representing gene expression profiles of tumour samples |
model |
list containing all the parameters to be optimized |
Value
The part of the loglikelihood function relevant to optimizing kappa
Author(s)
Gerald Quon, Catalina Anghel, Francis Nguyen
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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