Files in ISOpureR
Deconvolution of Tumour Profiles
MD5
NEWS
DESCRIPTION
NAMESPACE
inst/doc/ISOpureRGuide.pdf
inst/doc/ISOpureRGuide.Rnw
inst/tests/test_ISOpure_step1_beer.R
inst/tests/test_ISOpure_step2_beer.R
inst/extdata/Beer/beer.ISOpureS1model.250.transcripts.30.patients.RData
inst/extdata/Beer/beer.normaldata.250.transcripts.RData
inst/extdata/Beer/probeset_names.txt
inst/extdata/Beer/beer.ISOpureS2model.250.transcripts.30.patients.RData
inst/extdata/Beer/alphapurities_full_dataset.txt
inst/extdata/Beer/beer.tumordata.250.transcripts.30.patients.RData
vignettes/ISOpureRGuide.Rnw
vignettes/Figures/cancer-normal-comparison-heatmap.png
vignettes/Figures/isopure.jpg
vignettes/Figures/tumor-normal-comparison-heatmap.png
vignettes/Figures/network-model.jpg
R/ISOpureS1.model_optimize.omega.omega_compute_loglikelihood.R
R/ISOpureS2.model_core.compute_loglikelihood.R
R/ISOpureS1.model_optimize.omega.omega_deriv_loglikelihood.R
R/ISOpureS1.model_optimize.kappa.kappa_loglikelihood.R
R/ISOpure.util.logsum.R
R/ISOpureS1.model_optimize.opt_mm.R
R/ISOpure.model_optimize.vv.vv_deriv_loglikelihood.R
R/ISOpureS1.model_optimize.theta.theta_deriv_loglikelihood.R
R/ISOpureS1.model_optimize.opt_vv.R
R/ISOpureS1.model_core.compute_loglikelihood.R
R/ISOpureS1.model_optimize.omega.omega_loglikelihood.R
R/ISOpure.util.matlab_log.R
R/ISOpureS2.model_optimize.opt_kappa.R
R/ISOpureS1.model_optimize.kappa.kappa_deriv_loglikelihood.R
R/ISOpureS2.model_optimize.theta.theta_loglikelihood.R
R/ISOpureS2.model_optimize.opt_cc.R
R/ISOpure.model_optimize.vv.vv_loglikelihood.R
R/ISOpureS1.model_optimize.opt_theta.R
R/ISOpureS2.model_optimize.kappa.kappa_deriv_loglikelihood.R
R/ISOpure.step1.CPE.R
R/ISOpureS2.model_core.new_model.R
R/ISOpureS1.model_optimize.mm.mm_loglikelihood.R
R/RcppExports.R
R/ISOpureS2.model_optimize.theta.theta_deriv_loglikelihood.R
R/ISOpureS1.model_core.optmodel.R
R/ISOpureS2.model_optimize.opt_theta.R
R/ISOpureS2.model_optimize.kappa.kappa_loglikelihood.R
R/ISOpure.util.matlab_greater_than.R
R/ISOpureS1.model_optimize.opt_kappa.R
R/ISOpureS1.model_optimize.mm.mm_deriv_loglikelihood.R
R/ISOpureS2.model_optimize.kappa.kappa_compute_loglikelihood.R
R/ISOpureS2.model_optimize.vv.vv_compute_loglikelihood.R
R/ISOpureS2.model_core.optmodel.R
R/ISOpure.util.repmat.R
R/ISOpureS1.model_core.new_model.R
R/ISOpureS1.model_optimize.opt_omega.R
R/ISOpureS2.model_optimize.opt_vv.R
R/ISOpure.calculate.tac.R
R/ISOpure.model_optimize.cg_code.rminimize.R
R/ISOpureS1.model_optimize.kappa.kappa_compute_loglikelihood.R
R/ISOpureS1.model_optimize.theta.theta_loglikelihood.R
R/ISOpureS2.model_optimize.cc.cc_deriv_loglikelihood.R
R/ISOpureS1.model_optimize.vv.vv_compute_loglikelihood.R
R/ISOpure.util.matlab_less_than.R
R/ISOpure.step2.PPE.R
R/ISOpureS2.model_optimize.cc.cc_loglikelihood.R
src/rcppeigen_max_over_columns_or_rows.cpp
src/RcppExports.cpp
src/Makevars
src/packagename_init.c
man/ISOpureS1.model_optimize.kappa.kappa_loglikelihood.Rd
man/ISOpureS2.model_optimize.opt_vv.Rd
man/ISOpureS1.model_optimize.opt_mm.Rd
man/ISOpureS2.model_optimize.opt_kappa.Rd
man/ISOpureS2.model_core.compute_loglikelihood.Rd
man/ISOpure.util.matlab_greater_than.Rd
man/ISOpureS1.model_optimize.omega.omega_loglikelihood.Rd
man/ISOpure.model_optimize.vv.vv_deriv_loglikelihood.Rd
man/ISOpureS2.model_core.optmodel.Rd
man/ISOpureS1.model_optimize.kappa.kappa_deriv_loglikelihood.Rd
man/ISOpure.util.logsum.Rd
man/ISOpureS2.model_optimize.opt_cc.Rd
man/ISOpureS2.model_optimize.kappa.kappa_deriv_loglikelihood.Rd
man/ISOpureS1.model_core.new_model.Rd
man/ISOpure.util.matlab_less_than.Rd
man/ISOpureS1.model_optimize.omega.omega_deriv_loglikelihood.Rd
man/ISOpureS1.model_optimize.mm.mm_deriv_loglikelihood.Rd
man/ISOpure.step2.PPE.Rd
man/ISOpureS2.model_optimize.kappa.kappa_loglikelihood.Rd
man/ISOpure.util.matlab_log.Rd
man/ISOpure.model_optimize.vv.vv_loglikelihood.Rd
man/ISOpureS1.model_optimize.opt_omega.Rd
man/ISOpureS2.model_core.new_model.Rd
man/ISOpureS1.model_optimize.omega.omega_compute_loglikelihood.Rd
man/ISOpureS1.model_optimize.mm.mm_loglikelihood.Rd
man/ISOpure.calculate.tac.Rd
man/ISOpureS1.model_core.compute_loglikelihood.Rd
man/ISOpureS2.model_optimize.vv.vv_compute_loglikelihood.Rd
man/ISOpureS2.model_optimize.theta.theta_loglikelihood.Rd
man/ISOpureS2.model_optimize.theta.theta_deriv_loglikelihood.Rd
man/ISOpureS1.model_optimize.theta.theta_loglikelihood.Rd
man/ISOpureS1.model_optimize.opt_vv.Rd
man/ISOpureS2.model_optimize.cc.cc_loglikelihood.Rd
man/ISOpure.util.repmat.Rd
man/ISOpureS1.model_optimize.opt_theta.Rd
man/ISOpureS2.model_optimize.cc.cc_deriv_loglikelihood.Rd
man/ISOpureS2.model_optimize.kappa.kappa_compute_loglikelihood.Rd
man/ISOpureS1.model_core.optmodel.Rd
man/ISOpureS1.model_optimize.vv.vv_compute_loglikelihood.Rd
man/ISOpureS1.model_optimize.kappa.kappa_compute_loglikelihood.Rd
man/ISOpureS1.model_optimize.opt_kappa.Rd
man/ISOpure.model_optimize.cg_code.rminimize.Rd
man/ISOpure.step1.CPE.Rd
man/ISOpureS1.model_optimize.theta.theta_deriv_loglikelihood.Rd
man/ISOpureS2.model_optimize.opt_theta.Rd
build/vignette.rds
tests/test.ISOpureS2.model_optimize.theta_functions.R
tests/test.ISOpureS2.model_optimize.kappa_vv_functions.R
tests/test.ISOpureS1.model_optimize.mm_functions.R
tests/test.ISOpureS1.model_optimize.theta_functions.R
tests/test.ISOpureS2.model_optimize.cc_functions.R
tests/test.ISOpureS1.model_optimize.kappa_vv_omega_functions.R
