ISOpureS1.model_core.optmodel: Optimizes the ISOpure parameters for step 1

Description Usage Arguments Value Author(s)

View source: R/ISOpureS1.model_core.optmodel.R

Description

Optimizes the ISOpure parameters for step 1 cyclically until convergence

Usage

1
ISOpureS1.model_core.optmodel(tumordata, model, NUM_ITERATIONS=35)

Arguments

tumordata

a GxD matrix representing gene expression profiles of tumor samples

model

list containing all the parameters to be optimized

NUM_ITERATIONS

(optional) minimum number of iterations of optimization algorithm, default is 35

Value

model

updated model list containing all the parameters

Author(s)

Gerald Quon, Catalina Anghel, Francis Nguyen


ISOpureR documentation built on Jan. 11, 2018, 1:11 a.m.