Description Usage Arguments Value Author(s)
Optimizes the ISOpure parameters for step 2 cyclically until convergence
1 | ISOpureS2.model_core.optmodel(tumordata, model, NUM_ITERATIONS=35)
|
tumordata |
a GxD matrix representing gene expression profiles of tumor samples |
model |
list containing all the parameters to be optimized |
NUM_ITERATIONS |
(optional) minimum number of iterations of optimization algorithm, default is 35 |
model |
updated model list containing all the parameters |
Gerald Quon, Catalina Anghel, Francis Nguyen
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