getExampleData: Get the example data

In LncPath: Identifying the Pathways Regulated by LncRNA Sets of Interest

Description

Get the example data of LncPath package for litte trials.

Usage

getExampleData(ExampleData)

Arguments

ExampleData

A character, should be one of "SigLncs", "ExampleNet", "Labels", "Profile", "Result" and "Table".

Details

The function getExampleData(ExampleData = "SigLncs") obtains a vector of lncRNAs confirmed to be related with breast cancer. The function getExampleData(ExampleData = "Profile") obtains the expression profile as a data frame. The function getExampleData(ExampleData = "Labels") obtains a vector of 0/1s describing the class of samples in the expression profile. The function getExampleData(ExampleData = "Result") obtains a lncPath object come from the lncPath function. The function getExampleData(ExampleData = "Table") obtains a data frame as the summary of lncPath object. The function getExampleData(ExampleData = "ExampleNet") obtains a data frame as the edges of lncRNA-mRNA interaction net.

Author(s)

Junwei Han <[e-mail]>, Zeguo Sun <[e-mail]>

References

Subramanian, A., Tamayo, P., Mootha, V.K., Mukherjee, S., Ebert, B.L., Gillette, M.A., Paulovich, A., Pomeroy, S.L., Golub, T.R., Lander, E.S. et al. (2005) Gene set enrichment analysis: a knowledgebased approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A, 102, 15545-15550.

LncPath documentation built on May 2, 2019, 11:03 a.m.