Visualize the Kolmogorov-Smirnov running score of pathway
Visualize the Kolmogorov-Smirnov running score of each gene of a certain pathway
A lncPath object come from the lncPath function.
A string, the name of the pathway to be plot.
Plot the KS-statistic running score of certain pathway. The plot has three sections, the top section is a curve describes the cumulative ES score of pathway through all coding genes. The middle section contains signals telling which gene is in the pathway. The bottom section describes the weight distribution of genes.
Junwei Han <firstname.lastname@example.org>, Zeguo Sun <email@example.com>
Subramanian, A., Tamayo, P., Mootha, V.K., Mukherjee, S., Ebert, B.L., Gillette, M.A., Paulovich, A., Pomeroy, S.L., Golub, T.R., Lander, E.S. et al. (2005) Gene set enrichment analysis: a knowledgebased approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A, 102, 15545-15550.
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