lncPath2Table: Simplify the lncPath object into table

Description Usage Arguments Details Value Author(s) References Examples

View source: R/resultHandling.r

Description

Simplify the LncPath object into a data frame, which discribes the detail imformation of each pathway.

Usage

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lncPath2Table(Result)

Arguments

Result

The lncPath object come from the lncPath function.

Details

The lncPath object come from the lncPath function may be too complicated for user to view. This function can simplify it into a data frame. Each row of the data frame describe the detail of one pathway, including informations of pathway name, number of genes in the pathway, enrichment scores, normalized enrichment scores, p value and false discovery rate.

Value

A data frame, rows are pathways and columns are details of each pathway.

Author(s)

Junwei Han <[email protected]>, Zeguo Sun <[email protected]>

References

Subramanian, A., Tamayo, P., Mootha, V.K., Mukherjee, S., Ebert, B.L., Gillette, M.A., Paulovich, A., Pomeroy, S.L., Golub, T.R., Lander, E.S. et al. (2005) Gene set enrichment analysis: a knowledgebased approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A, 102, 15545-15550.

Examples

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##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

## The function is currently defined as
Result <- getExampleData("Result")
Table <- lncPath2Table(Result)
head(Table)

LncPath documentation built on Sept. 26, 2018, 5:04 p.m.