getNet: Get the background lncRNA-mRNA interaction network

In LncPath: Identifying the Pathways Regulated by LncRNA Sets of Interest

Description

Get the background lncRNA-mRNA interaction network.

Usage

getNet()

Details

Get the background lncRNA-mRNA interaction network, it was built by intergrating an lncRNA-mRNA co-expression network and the protein-protein interaction network.

Author(s)

Junwei Han <[e-mail]>, Zeguo Sun <[e-mail]>

References

Subramanian, A., Tamayo, P., Mootha, V.K., Mukherjee, S., Ebert, B.L., Gillette, M.A., Paulovich, A., Pomeroy, S.L., Golub, T.R., Lander, E.S. et al. (2005) Gene set enrichment analysis: a knowledgebased approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A, 102, 15545-15550.

Examples

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.
LncPathNet <- getNet();

Example output

Loading required package: igraph

Attaching package: 'igraph'

The following objects are masked from 'package:stats':

    decompose, spectrum

The following object is masked from 'package:base':

    union

Loading required package: samr
Loading required package: impute
Loading required package: matrixStats

LncPath documentation built on May 2, 2019, 11:03 a.m.