compute_exome_coverage | R Documentation |
This function will take a bed file, and return the sum of the lengths of unique regions
compute_exome_coverage(targets_bed_file, out_file = NULL)
targets_bed_file |
Path to a bed file with exome target regions |
out_file |
A file name to which the number of covered bases will be written, instead of returning the value |
An integer value of the sum of the length of the covered regions
Mayank Tandon, Ashish Jain
library(MAFDash) bedFile <- system.file("extdata", "test.bed", package = "MAFDash") coverage<-compute_exome_coverage(bedFile)
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