This function will take a bed file, and return the sum of the lengths of unique regions
compute_exome_coverage(targets_bed_file, out_file = NULL)
Path to a bed file with exome target regions
A file name to which the number of covered bases will be written, instead of returning the value
An integer value of the sum of the length of the covered regions
Mayank Tandon, Ashish Jain
library(MAFDash) bedFile <- system.file("extdata", "test.bed", package = "MAFDash") coverage<-compute_exome_coverage(bedFile)
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