createOncoMatrix | R Documentation |
Creates matrix for oncoplot from maf file
createOncoMatrix(maf, g = NULL, add_missing = FALSE)
maf |
The MAF object |
g |
g |
add_missing |
add_missing |
A list of objects to be used as an input for generateOncoPlot function
Mayank Tandon, Ashish Jain
library(MAFDash) library(maftools) maf <- system.file("extdata", "test.mutect2.maf.gz", package = "MAFDash") oncoMatrix<-createOncoMatrix(read.maf(maf),g=c("GNA11","MACF1"))
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