createOncoMatrix: Creates matrix for oncoplot
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createOncoMatrix R Documentation
Creates matrix for oncoplot
Description
Creates matrix for oncoplot from maf file
Usage
createOncoMatrix(maf, g = NULL, add_missing = FALSE)
Arguments
maf
The MAF object
g
g
add_missing
add_missing
Value
A list of objects to be used as an input for generateOncoPlot function
Author(s)
Mayank Tandon, Ashish Jain
Examples
library(MAFDash)
library(maftools)
maf <- system.file("extdata", "test.mutect2.maf.gz", package = "MAFDash")
oncoMatrix<-createOncoMatrix(read.maf(maf),g=c("GNA11","MACF1"))
MAFDash documentation built on April 1, 2022, 9:05 a.m.
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| createOncoMatrix | R Documentation |
Creates matrix for oncoplot
Description
Creates matrix for oncoplot from maf file
Usage
createOncoMatrix(maf, g = NULL, add_missing = FALSE)
Arguments
maf |
The MAF object |
g |
g |
add_missing |
add_missing |
Value
A list of objects to be used as an input for generateOncoPlot function
Author(s)
Mayank Tandon, Ashish Jain
Examples
library(MAFDash)
library(maftools)
maf <- system.file("extdata", "test.mutect2.maf.gz", package = "MAFDash")
oncoMatrix<-createOncoMatrix(read.maf(maf),g=c("GNA11","MACF1"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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