getTCGAClinicalAnnotation: Function to extract the clinical annotations from TCGA

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Function to extract the clinical annotations from TCGA

Description

This function download and extract the clinical annotations from TCGA.

Usage

getTCGAClinicalAnnotation(
  cancerCodes = "ACC",
  outputFolder = tempdir(),
  plotdata = NULL
)

Arguments

cancerCodes	A character vector of TCGA cancer codes
outputFolder	path of the file containing the clinical annotations from TCGA
plotdata	Flag to plot the annotations

Value

A list containing the TCGA clinical annotations

Author(s)

Mayank Tandon, Ashish Jain

Examples

library(MAFDash)
cancerCodes <- "ACC"
#clinicalData <- getTCGAClinicalAnnotation(cancerCodes = cancerCodes)

MAFDash documentation built on April 1, 2022, 9:05 a.m.