View source: R/generateBurdenPlot.R
generateBurdenPlot | R Documentation |
This function generates burden plot using the MAF data.
generateBurdenPlot( mymaf, plotType = "Dotplot", mb_covered = NULL, save_data_to_file = NULL )
mymaf |
The MAF object |
plotType |
Type of plot (Either "Dotplot" or "Barplot") |
mb_covered |
Total covered bases for mutation count normalization |
save_data_to_file |
The name and path of the output file |
A ggplot object containing the burden plot
Mayank Tandon, Ashish Jain
library(MAFDash) library(maftools) maf <- system.file("extdata", "test.mutect2.maf.gz", package = "MAFDash") generateBurdenPlot(read.maf(maf), plotType="Dotplot") generateBurdenPlot(read.maf(maf), plotType="Barplot")
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.