dataHeliconiusMartin: Heliconius gene tree dataset

In MSCquartets: Analyzing Gene Tree Quartets under the Multi-Species Coalescent

Heliconius gene tree dataset

Description

A text file dataset for Heliconius butterflies containing 2909 gene trees on 7 taxa, with 4 individuals sampled for each of 3 of the taxa, for a total of 16 leaves per gene tree. This is a subset of the data of \insertCiteMartin2013;textualMSCquartets.

Format

A text file with 2909 metric Newick gene trees each with 16 leaves labelled:
chioneus.553, chioneus.560, chioneus.564, chioneus.565,
ethilla.67, hecale.273, melpomeneFG.13435, melpomeneFG.9315,
melpomeneFG.9316, melpomeneFG.9317, pardalinus.371, rosina.2071,
rosina.531, rosina.533, rosina.546, sergestus.202

Details

File is accessed as system.file("extdata","dataHeliconiusMartin",package="MSCquartets"), for example via the ape command:

gts = read.tree(file=system.file("extdata","dataHeliconiusMartin",package="MSCquartets"))

Source

\Sexpr[results=rd]{tools:::Rd_expr_doi("10.5061/dryad.dk712")}

References

\insertRef

Martin2013MSCquartets

MSCquartets documentation built on Nov. 2, 2023, 5:32 p.m.