topDist: Topological distances on a tree

In MSCquartets: Analyzing Gene Tree Quartets under the Multi-Species Coalescent

Topological distances on a tree

Description

Compute a pairwise table of topological distances from a tree, after contracting short edges

Usage

topDist(tree, epsilon = 0)

Arguments

tree	a phylo object, with or without edge lengths
epsilon	a tolerance, so all edges shorter than epsilon are contracted

Value

a distance table, with rows and columns named by taxa

MSCquartets documentation built on Oct. 31, 2024, 1:08 a.m.