Files in MSCquartets
Analyzing Gene Tree Quartets under the Multi-Species Coalescent
MD5
NAMESPACE
DESCRIPTION
LICENSE
R/RcppExports.R
R/sysdata.rda
R/ExpectedCFs.R
R/TreeOfBlobs.R
R/pHist.R
R/MSCquartets-package.R
R/ToBtoLevel1.R
R/StarQuartetHypTest.R
R/TreeQuartetHypTest.R
R/NANUQ.R
R/QuartetTally.R
R/TreeQuartetDist.R
R/ParallelTableCpp.R
R/SimplexPlot.R
R/evonetMisc.R
R/WQDCrecursive.R
src/RcppExports.cpp
src/QuartetTallyCpp.cpp
src/TINNIKcpp.cpp
inst/REFERENCES.bib
inst/doc/TINNIK.html
inst/doc/NANUQplus.R
inst/doc/NANUQplus.Rmd
inst/doc/NANUQplus.html
inst/doc/TINNIK.R
inst/doc/TINNIK.Rmd
inst/extdata/dataGeneTreeSample
inst/extdata/dataYeastRokas
inst/extdata/dataPapioniniVanderpool
build/vignette.rds
build/partial.rdb
vignettes/NANUQplus.Rmd
vignettes/vigREFS.bib
vignettes/TINNIK.Rmd
data/tableHeliconiusMartin.rda
data/pTableYeastRokas.rda
data/tableLeopardusLescroart.rda
man/T3density.Rd
man/BQinference.Rd
man/simplexPoint.Rd
man/quartetStarTestInd.Rd
man/circHybOrders.Rd
man/taxonNames.Rd
man/MSCquartets-package.Rd
man/simplexLabels.Rd
man/NANUQ.Rd
man/NANUQdist.Rd
man/WQDSAdjustLengths.Rd
man/resolveLevel1.Rd
man/quartetNetworkDist.Rd
man/expectedCFs.Rd
man/WQDS.Rd
man/suppressNetBinaryNodes.Rd
man/quartetTreeErrorProb.Rd
man/quartetDist.Rd
man/quartetTableDominant.Rd
man/quartetBTinferencePlot.Rd
man/quartetTableResolved.Rd
man/resolveCycle.Rd
man/allPerms.Rd
man/TINNIK.Rd
man/HolmBonferroni.Rd
man/WQDCrecursive.Rd
man/dataPapioniniVanderpool.Rd
man/nodeGroups.Rd
man/ordersHeuristicmodNANUQ.Rd
man/pTableYeastRokas.Rd
man/simplexCoords.Rd
man/treeFromSplits.Rd
man/dataYeastRokas.Rd
man/tableLeopardusLescroart.Rd
man/simplexSegment.Rd
man/quartetTablePrint.Rd
man/pvalHist.Rd
man/cutDensity.Rd
man/quartetTestPlot.Rd
man/collapseEdges.Rd
man/M0.Rd
man/quartetTableCollapse.Rd
man/fitCycleOrders.Rd
man/topDist.Rd
man/dataGeneTreeSample.Rd
man/blobDistance.Rd
man/quartetTreeTestInd.Rd
man/quartetCutTestInd.Rd
man/quartetCutMLE.Rd
man/simplexPrepare.Rd
man/QDS.Rd
man/simplexText.Rd
man/labelIntNodes.Rd
man/powerDivStat.Rd
man/combineCycleResolutions.Rd
man/treeOfBlobs.Rd
man/expmodNANUQCycleDist.Rd
man/expNANUQCycleDist.Rd
man/quartetStarTest.Rd
man/TINNIKdist.Rd
man/nexusDist.Rd
man/estimateEdgeLengths.Rd
man/quartetTallyCpp.Rd
man/quartetTableParallel.Rd
man/T1density.Rd
man/quartetWeightedDist.Rd
man/tableHeliconiusMartin.Rd
man/sortQuartetTableRows.Rd
man/WQDC.Rd
man/quartetCutTest.Rd
man/initBquartets.Rd
man/quartetTable.Rd
man/QDC.Rd
man/compatibleSplits.Rd
man/quartetTreeTest.Rd
