quartetCutMLE | R Documentation |

Computes Maximum likelihood estimate of quartet tree of blobs topology and CF under the Cut model of \insertCiteABMR24;textualMSCquartets, Section 3. In case of ties, the topology and CF estimate are chosen randomly among those maximizing the likelihood. In particular, a resolved tree of blobs is always returned.

```
quartetCutMLE(qcCF)
```

`qcCF` |
a quartet count Concordance Factor (a 3-element vector) |

output with `output$topology`

= 1, 2, or 3 indicating topology of
tree of blobs in accord with ordering of qcCF entries,
and `output$CFhat`

the ML estimate for the CF

ABMR24MSCquartets

```
quartetCutMLE(c(17,72,11))
quartetCutMLE(c(48,11,41))
quartetCutMLE(c(11,48,41))
quartetCutMLE(c(48,41,11))
```

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.