BQinference: Main loop of B-quartet inference

In MSCquartets: Analyzing Gene Tree Quartets under the Multi-Species Coalescent

Main loop of B-quartet inference

Description

This is a C++ function, called from TINNIKdist, to infer B and T quartets.

Usage

BQinference(pTable, C, Cn4, n, Bquartets, L1, lenL1, Nrule1, Nrule2, cuttops)

Arguments

pTable	a quartet table with p-values
C	precomputed binomial coefficients
Cn4	precomputed binomial coefficient
n	number of taxa
Bquartets	0/1 vector of initial Bquartets
L1	vector of recently inferred B quartets
lenL1	lnegth of L1
Nrule1	count of inference from rule 1
Nrule2	count of inference from rule 2
cuttops	inferred cut topologies

See Also

quartetTable, quartetTableParallel

MSCquartets documentation built on Oct. 31, 2024, 1:08 a.m.