labelIntNodes: Label internal nodes on tree

In MSCquartets: Analyzing Gene Tree Quartets under the Multi-Species Coalescent

Label internal nodes on tree

Description

Label all internal nodes of tree, as "Node NN" where NN is the node number, and plot tree with labels

Usage

labelIntNodes(tree, plot = TRUE, type = "unrooted")

Arguments

tree	a rooted or unrooted tree (phylo object)
plot	TRUE for plot, FALSE for no plot
type	plot type (e.g.,"unrooted") to be passed to ape plot command

Value

a phylo object with internal node labels

See Also

resolveCycle, combineCycleResolutions, resolveLevel1

Examples

data(pTableYeastRokas)
out=TINNIK(pTableYeastRokas,test="T3",alpha=.01, beta=.05)
labelIntNodes(out$ToB)

MSCquartets documentation built on Oct. 31, 2024, 1:08 a.m.