nexusDist: Write a distance table to a file in nexus format
In MSCquartets: Analyzing Gene Tree Quartets under the Multi-Species Coalescent

nexusDist

R Documentation

Write a distance table to a file in nexus format

Description

Write a distance table to a file in nexus format.

Usage

nexusDist(distMatrix, outfilename)

Arguments

`distMatrix`	a square matrix giving a distance table, with rows and columns labeled by taxon names
`outfilename`	the name of an output file

Examples

gtrees=read.tree(file=system.file("extdata","dataGeneTreeSample",package="MSCquartets"))
tnames=taxonNames(gtrees)
QT=quartetTable(gtrees,tnames[1:6])
RQT=quartetTableResolved(QT)
DQT=quartetTableDominant(RQT)
Dist=quartetDist(DQT)
nexusDist(Dist,outfile = file.path(tempdir(), "NANUQdist"))

MSCquartets documentation built on April 4, 2025, 5:14 a.m.