nexusDist: Write a distance table to a file in nexus format

View source: R/NANUQ.R

nexusDistR Documentation

Write a distance table to a file in nexus format

Description

Write a distance table to a file in nexus format.

Usage

nexusDist(distMatrix, outfilename)

Arguments

distMatrix

a square matrix giving a distance table, with rows and columns labeled by taxon names

outfilename

the name of an output file

Examples

gtrees=read.tree(file=system.file("extdata","dataGeneTreeSample",package="MSCquartets"))
tnames=taxonNames(gtrees)
QT=quartetTable(gtrees,tnames[1:6])
RQT=quartetTableResolved(QT)
DQT=quartetTableDominant(RQT)
Dist=quartetDist(DQT)
nexusDist(Dist,outfile = file.path(tempdir(), "NANUQdist"))


MSCquartets documentation built on Nov. 2, 2023, 5:32 p.m.