nexusDist | R Documentation |
Write a distance table to a file in nexus format.
nexusDist(distMatrix, outfilename)
distMatrix |
a square matrix giving a distance table, with rows and columns labeled by taxon names |
outfilename |
the name of an output file |
No return value, called for side effects
gtrees=read.tree(file=system.file("extdata","dataGeneTreeSample",package="MSCquartets")) tnames=taxonNames(gtrees) QT=quartetTable(gtrees,tnames[1:6]) RQT=quartetTableResolved(QT) DQT=quartetTableDominant(RQT) Dist=quartetDist(DQT) nexusDist(Dist,outfile = file.path(tempdir(), "NANUQdist"))
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