View source: R/TreeQuartetDist.R
quartetWeightedDist | R Documentation |
Compute the Weighted Quartet Distance between taxa of \insertCiteYR19;textualMSCquartets from a table specifying a collection of quartets on
n
taxa and the quartets' internal branch lengths.
quartetWeightedDist(dqt)
dqt |
an ( |
a pairwise distance matrix on n
taxa
YR19MSCquartets
quartetTableDominant
,
WQDSAdjustLengths
,
WQDS
,
WQDC
,
WQDCrecursive
,
quartetWeightedDist
gtrees=read.tree(file=system.file("extdata","dataGeneTreeSample",package="MSCquartets")) tnames=taxonNames(gtrees) QT=quartetTable(gtrees,tnames[1:6]) RQT=quartetTableResolved(QT) DQT=quartetTableDominant(RQT,bigweights="finite") D=quartetWeightedDist(DQT) tree=NJ(D) stree=WQDSAdjustLengths(tree) write.tree(stree)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.