treeFromSplits: Produce tree from compatible splits

In MSCquartets: Analyzing Gene Tree Quartets under the Multi-Species Coalescent

Produce tree from compatible splits

Description

Produce tree from compatible splits

Usage

treeFromSplits(sp, plot = FALSE)

Arguments

sp	a compatible split system, as produced by compatibleSplits
plot	a logical, if TRUE, plot tree

Value

a phylo object for tree displaying splits

See Also

compatibleSplits, TINNIK

Examples

data(pTableYeastRokas)
dist=NANUQdist(pTableYeastRokas, alpha=.05, beta=.95,outfile=NULL)
nn=neighborNet(dist)
plot(nn,"2D")
tob=treeFromSplits(compatibleSplits(nn$splits),plot=TRUE) #produce tree of blobs of splits graph

MSCquartets documentation built on Oct. 31, 2024, 1:08 a.m.