Files in MasterBayes
ML and MCMC Methods for Pedigree Reconstruction and Analysis

inst
inst/CITATION
inst/doc
inst/doc/Tutorial.pdf
inst/doc/Tutorial.Rnw
src
src/SampDomG.cc
src/lapack.h
src/Makevars
src/SampS.h
src/calcX_GcervusS.cc
src/LikFunctions.h
src/SampG.cc
src/error.h
src/fillXG.cc
src/calcX_GS.cc
src/matrix_forward_iterator.h
src/ErrorMat.cc
src/calcX_Gmm.cc
src/SampG.h
src/legalG.cc
src/MCMCped.h
src/MasterBayes_init.c
src/SpecRand.h
src/LikFunctions.cc
src/calcX_GD.cc
src/calcX_G.cc
src/calcX_GcervusD.cc
src/algorithm.h
src/SpecRand.cc
src/SampDomG.h
src/optimize.h
src/calcX_Gcervus.cc
src/MCMCped.cc
src/stat.h
src/Read_in_data.cc
src/matrix_random_access_iterator.h
src/ide.h
src/SampP.cc
src/SampD.h
src/SampD.cc
src/smath.h
src/SampP.h
src/SampGC.h
src/la.h
src/Read_in_data.h
src/ErrorMat.h
src/defs.h
src/General.h
src/matrix_bidirectional_iterator.h
src/SampGC.cc
src/calcX_G.h
src/distributions.h
src/mismatches.cc
src/datablock.h
src/matrix.h
src/SampS.cc
NAMESPACE
data
data/WarblerP.tab.gz
data/WarblerG.tab.gz
R
R/modeG.R R/simgenotypes.R R/extractA.R R/simpedigree.R R/MLE.popsize.R R/orderPed.R R/getPost.R R/beta.loglik.R R/mismatches.R R/getsPandtP.R R/genotype.list.R R/MCMCped.R R/varPed.R R/reordXlist.R R/ErrorCheck.R R/insertPed.R R/MLE.beta.R R/MLE.ped.R R/popsize.loglik.R R/autocorrP.R R/genotypeD.R R/post.pairs.R R/PedClasses.R R/legalG.R R/consensusG.R R/GtoC.R R/getXlist.R R/modeP.R R/fillX.G.R
vignettes
vignettes/Tutorial-101.pdf vignettes/Tutorial-041.pdf vignettes/Tutorial-033.pdf vignettes/Tutorial-023.pdf vignettes/Tutorial-048.pdf vignettes/Tutorial-094.pdf vignettes/Tutorial-036.pdf
vignettes/Figures
vignettes/Figures/buildCN.R
vignettes/Figures/Tutorial.Rnw
vignettes/Tutorial-107.pdf vignettes/Tutorial-007.pdf vignettes/Tutorial-089.pdf vignettes/Tutorial-024.pdf vignettes/Tutorial-097.pdf vignettes/Tutorial-046.pdf vignettes/Tutorial-065.pdf vignettes/Tutorial-067.pdf vignettes/Tutorial-050.pdf vignettes/Tutorial-042.pdf vignettes/Tutorial-059.pdf vignettes/Tutorial-031.pdf vignettes/Tutorial-053.pdf vignettes/Tutorial-109.pdf vignettes/Tutorial-100.pdf vignettes/Tutorial-082.pdf vignettes/Tutorial-086.pdf vignettes/Tutorial-051.pdf vignettes/Tutorial-062.pdf vignettes/Tutorial-070.pdf vignettes/Tutorial-030.pdf
vignettes/MasterBayes.bib
vignettes/Tutorial-074.pdf vignettes/Tutorial-010.pdf vignettes/Tutorial-106.pdf vignettes/Tutorial-025.pdf vignettes/Tutorial-032.pdf vignettes/Tutorial-080.pdf vignettes/Tutorial-098.pdf vignettes/Tutorial-008.pdf vignettes/Tutorial-029.pdf vignettes/Tutorial-049.pdf vignettes/Tutorial-061.pdf vignettes/Tutorial-103.pdf vignettes/Tutorial-009.pdf vignettes/Tutorial-078.pdf vignettes/Tutorial-095.pdf vignettes/Tutorial-072.pdf vignettes/Tutorial-047.pdf vignettes/Tutorial-028.pdf vignettes/Tutorial-011.pdf vignettes/Tutorial-085.pdf vignettes/Tutorial-038.pdf vignettes/Tutorial-052.pdf vignettes/Tutorial-092.pdf vignettes/Tutorial-006.pdf vignettes/Tutorial-037.pdf vignettes/Tutorial-088.pdf vignettes/Tutorial-083.pdf vignettes/Tutorial-040.pdf vignettes/Tutorial-104.pdf vignettes/Tutorial-064.pdf vignettes/Tutorial-045.pdf vignettes/Rlogo.pdf
vignettes/Tutorial.Rnw
vignettes/Tutorial-091.pdf vignettes/Tutorial-075.pdf vignettes/Tutorial-077.pdf
MD5
build
build/vignette.rds
DESCRIPTION
man
man/mismatches.Rd man/startPed.Rd man/summary.genotypeD.Rd man/MasterBayes.Rd man/fillX.G.Rd man/beta.loglik.Rd man/MLE.ped.Rd man/PdataPed.Rd man/consenusG.Rd man/MCMCped.Rd man/MLE.beta.Rd man/simpedigree.Rd man/simgenotypes.Rd man/modeP.Rd man/legalG.Rd man/priorPed.Rd man/insertPed.Rd man/WarblerG.Rd man/genotypeD.Rd man/modeG.Rd man/orderPed.Rd man/reordXlist.Rd man/MLE.popsize.Rd man/varPed.Rd man/getXlist.Rd man/tunePed.Rd man/autocorrP.Rd man/genotype.list.Rd man/post.pairs.Rd man/WarblerP.Rd man/extractA.Rd man/popsize.loglik.Rd man/GdataPed.Rd
.Rinstignore
MasterBayes documentation built on July 30, 2017, 1:01 a.m.