Files in MasterBayes

ML and MCMC Methods for Pedigree Reconstruction and Analysis

.Rinstignore

MD5

NAMESPACE

DESCRIPTION

R/genotype.list.R R/post.pairs.R R/extractA.R R/orderPed.R R/autocorrP.R R/consensusG.R R/modeG.R R/beta.loglik.R R/legalG.R R/MLE.popsize.R R/simgenotypes.R R/varPed.R R/modeP.R R/ErrorCheck.R R/MLE.beta.R R/mismatches.R R/PedClasses.R R/reordXlist.R R/insertPed.R R/fillX.G.R R/MLE.ped.R R/GtoC.R R/popsize.loglik.R R/simpedigree.R R/getXlist.R R/MCMCped.R R/genotypeD.R R/getPost.R R/getsPandtP.R

src/General.h

src/matrix.h

src/lapack.h

src/Makevars

src/calcX_GD.cc

src/SampDomG.h

src/SampS.h

src/Read_in_data.cc

src/SpecRand.h

src/LikFunctions.cc

src/calcX_GcervusS.cc

src/calcX_G.h

src/legalG.cc

src/SampG.cc

src/SampGC.h

src/calcX_Gcervus.cc

src/stat.h

src/SpecRand.cc

src/SampG.h

src/matrix_bidirectional_iterator.h

src/calcX_GcervusD.cc

src/Read_in_data.h

src/SampD.h

src/MasterBayes_init.c

src/SampDomG.cc

src/matrix_forward_iterator.h

src/distributions.h

src/error.h

src/SampD.cc

src/defs.h

src/ErrorMat.cc

src/datablock.h

src/MCMCped.h

src/calcX_Gmm.cc

src/calcX_GS.cc

src/SampS.cc

src/calcX_G.cc

src/ErrorMat.h

src/LikFunctions.h

src/SampGC.cc

src/SampP.h

src/MCMCped.cc

src/smath.h

src/SampP.cc

src/mismatches.cc

src/algorithm.h

src/la.h

src/ide.h

src/matrix_random_access_iterator.h

src/fillXG.cc

src/optimize.h

inst/CITATION

inst/doc/Tutorial.pdf

inst/doc/Tutorial.Rnw

build/vignette.rds

vignettes/Tutorial-100.pdf vignettes/Tutorial-107.pdf vignettes/Tutorial-095.pdf vignettes/Tutorial-097.pdf vignettes/Tutorial-078.pdf vignettes/Tutorial-011.pdf vignettes/Tutorial-008.pdf vignettes/Tutorial-029.pdf vignettes/Tutorial-045.pdf vignettes/Tutorial-040.pdf vignettes/Tutorial-031.pdf vignettes/Tutorial-053.pdf vignettes/Tutorial-088.pdf vignettes/Tutorial-082.pdf vignettes/Tutorial-104.pdf vignettes/Tutorial-106.pdf vignettes/Rlogo.pdf vignettes/Tutorial-086.pdf vignettes/Tutorial-064.pdf vignettes/Tutorial-025.pdf vignettes/Tutorial-098.pdf vignettes/Tutorial-061.pdf vignettes/Tutorial-023.pdf vignettes/Tutorial-042.pdf vignettes/Tutorial-101.pdf vignettes/Tutorial-010.pdf vignettes/Tutorial-037.pdf vignettes/Tutorial-091.pdf vignettes/Tutorial-028.pdf vignettes/Tutorial-059.pdf vignettes/Tutorial-030.pdf vignettes/Tutorial-009.pdf vignettes/Tutorial-041.pdf vignettes/Tutorial-067.pdf vignettes/Tutorial-072.pdf vignettes/Tutorial-050.pdf vignettes/Tutorial-094.pdf vignettes/Tutorial-038.pdf vignettes/Tutorial-036.pdf vignettes/Tutorial-092.pdf vignettes/Tutorial-046.pdf vignettes/Tutorial-089.pdf vignettes/Tutorial-109.pdf vignettes/Tutorial-080.pdf vignettes/Tutorial-033.pdf vignettes/Tutorial-103.pdf vignettes/Tutorial-032.pdf vignettes/Tutorial-065.pdf vignettes/Tutorial-074.pdf vignettes/Tutorial-049.pdf vignettes/Tutorial-006.pdf vignettes/Tutorial-085.pdf vignettes/Tutorial-052.pdf vignettes/Tutorial-070.pdf vignettes/Tutorial-047.pdf vignettes/Tutorial-075.pdf

vignettes/Tutorial.Rnw

vignettes/Tutorial-051.pdf vignettes/Tutorial-007.pdf vignettes/Tutorial-024.pdf vignettes/Tutorial-077.pdf vignettes/Tutorial-062.pdf vignettes/Tutorial-048.pdf vignettes/Tutorial-083.pdf

vignettes/MasterBayes.bib

vignettes/Figures/buildCN.R

vignettes/Figures/Tutorial.Rnw

data/WarblerP.tab.gz

data/WarblerG.tab.gz

man/modeP.Rd man/legalG.Rd man/orderPed.Rd man/MLE.beta.Rd man/MasterBayes.Rd man/extractA.Rd man/PdataPed.Rd man/WarblerG.Rd man/WarblerP.Rd man/post.pairs.Rd man/simgenotypes.Rd man/autocorrP.Rd man/consenusG.Rd man/genotypeD.Rd man/beta.loglik.Rd man/GdataPed.Rd man/summary.genotypeD.Rd man/genotype.list.Rd man/simpedigree.Rd man/MCMCped.Rd man/mismatches.Rd man/getXlist.Rd man/insertPed.Rd man/modeG.Rd man/MLE.ped.Rd man/startPed.Rd man/popsize.loglik.Rd man/priorPed.Rd man/varPed.Rd man/MLE.popsize.Rd man/fillX.G.Rd man/tunePed.Rd man/reordXlist.Rd

MasterBayes documentation built on June 22, 2022, 5:06 p.m.