consenusG: Obtains a consensus genotype from duplicate samples

In MasterBayes: ML and MCMC Methods for Pedigree Reconstruction and Analysis

Obtains a consensus genotype from duplicate samples

Description

A function for obtaining a consensus genotype from duplicate samples. The amount of missing data is minimised, and preference is given to samples with lower genotyping error

Usage

consensusG(GdP, cat.levels=NULL, gmax=FALSE, het=FALSE)

Arguments

GdP	a GdataPed object
cat.levels	order of genotyping error rate categories, with most reliable category first
gmax	logical; if a most represented genotype exists should it be saved
het	logical; should heterozygotes be saved over homozygotes - overrides cat.levels

Value

GdP	a GdataPed object

Author(s)

Jarrod Hadfield [e-mail]

See Also

GdataPed

MasterBayes documentation built on June 22, 2022, 5:06 p.m.