Man pages for MasterBayes
ML and MCMC Methods for Pedigree Reconstruction and Analysis
| autocorrP | Autocorrelation Function for Parenatge Assignment |
| beta.loglik | Log-Likelihood of Beta |
| consenusG | Obtains a consensus genotype from duplicate samples |
| extractA | Allele Frequencies |
| fillX.G | Mendelian Transition Probabilities |
| GdataPed | GdataPed Object |
| genotypeD | genotypeD Object |
| genotype.list | Genotype Objects for all Loci |
| getXlist | Design Matrices for the Multinomial Log-Linear Model |
| insertPed | Inserts Founders into a Pedigree |
| legalG | Legal Genotype Configurations |
| MasterBayes | Maximum Likelihood and Markov chain Monte Carlo methods for... |
| MCMCped | Markov chain Monte Carlo Methods for Pedigree Reconstruction... |
| mismatches | Parent-Offspring Genotype Mismatches |
| MLE.beta | Maximum Likelihood Estimation of Beta |
| MLE.ped | Maximum Likelihood Estimation of the Pedigree |
| MLE.popsize | Maximum Likelihood Estimation of the Unsampled Population... |
| modeG | Posterior Mode of Genotypes |
| modeP | Posterior Mode of Parents |
| orderPed | Orders a Pedigree |
| PdataPed | PdataPed Object |
| popsize.loglik | Log-Likelihood of Unsampled Population Size |
| post.pairs | Returns pairs of individuals that fall into specific... |
| priorPed | priorPed Object |
| reordXlist | Reorders Design Matrices |
| simgenotypes | Genotype and Genotyping Error Simulation |
| simpedigree | Simulates a Pedigree given a Log-Linear Model |
| startPed | startPed Object |
| summary.genotypeD | genotypeD Object |
| tunePed | tunePed Object |
| varPed | Transforms Variables for a Multinomial Log-Linear Model |
| WarblerG | Seychelles Warbler Genotypes |
| WarblerP | Seychelles Warbler Phenotypes |
