Nothing
README.md
In MethScope: Ultra-Fast Analysis of Sparse DNA Methylome via Recurrent Pattern Encoding
MethScope
MethScope identifies Most Recurrent Methylation Patterns (MRMPs) as the basis to encode latent representations for interpretatble analysis of DNA mehtylation data, in particular single cell and spatial methylome. The MRMPs embeddings will support automatic cell annotation, bulk deconvolution, unsupervisded clustering, and cancer cell of origin prediction.
Installation
Install the released version of usethis from CRAN:
install.packages("MethScope")
or install from github
devtools::install_github("zhou-lab/MethScope")
Usage
MethScope performs rapid cell annotation, deconvolution and other tasks for single cell and spatial DNA methylome. Please check out our documentation for more details:
Citation
If you use MethScope, kindly cite (coming soon):
Hongxiang Fu, Chin Nien Lee, Cameron Cloud, Hao Xu, Yanxiang Deng, Wanding Zhou, MethScope: Ultra-fast Analysis of Sparse DNA Methylome via Recurrent Pattern Encoding.
Try the MethScope package in your browser
Any scripts or data that you put into this service are public.
MethScope documentation built on Feb. 27, 2026, 1:08 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
MethScope
MethScope identifies Most Recurrent Methylation Patterns (MRMPs) as the basis to encode latent representations for interpretatble analysis of DNA mehtylation data, in particular single cell and spatial methylome. The MRMPs embeddings will support automatic cell annotation, bulk deconvolution, unsupervisded clustering, and cancer cell of origin prediction.
Installation
Install the released version of usethis from CRAN:
install.packages("MethScope")
or install from github
devtools::install_github("zhou-lab/MethScope")
Usage
MethScope performs rapid cell annotation, deconvolution and other tasks for single cell and spatial DNA methylome. Please check out our documentation for more details:
Citation
If you use MethScope, kindly cite (coming soon):
Hongxiang Fu, Chin Nien Lee, Cameron Cloud, Hao Xu, Yanxiang Deng, Wanding Zhou, MethScope: Ultra-fast Analysis of Sparse DNA Methylome via Recurrent Pattern Encoding.
Try the MethScope package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.