GenerateInput: Generate pattern level data for cell type annotation
In MethScope: Ultra-Fast Analysis of Sparse DNA Methylome via Recurrent Pattern Encoding
View source: R/GenerateInput.R
GenerateInput R Documentation
Generate pattern level data for cell type annotation
Description
Generate pattern level data for cell type annotation
Usage
GenerateInput(query_fn, knowledge_fn)
Arguments
query_fn
File path to query .cg
knowledge_fn
File path to pattern file .cm
Value
A cell by pattern matrix.
Examples
qry <- system.file("extdata", "toy.cg", package = "MethScope")
msk <- system.file("extdata", "toy.cm", package = "MethScope")
res <- GenerateInput(qry, msk)
MethScope documentation built on Feb. 27, 2026, 1:08 a.m.
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View source: R/GenerateInput.R
| GenerateInput | R Documentation |
Generate pattern level data for cell type annotation
Description
Generate pattern level data for cell type annotation
Usage
GenerateInput(query_fn, knowledge_fn)
Arguments
query_fn |
File path to query .cg |
knowledge_fn |
File path to pattern file .cm |
Value
A cell by pattern matrix.
Examples
qry <- system.file("extdata", "toy.cg", package = "MethScope")
msk <- system.file("extdata", "toy.cm", package = "MethScope")
res <- GenerateInput(qry, msk)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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