PlotUMAP_fixedwindow: Generate UMAP for the final prediction based on fixed window...

In MethScope: Ultra-Fast Analysis of Sparse DNA Methylome via Recurrent Pattern Encoding

Generate UMAP for the final prediction based on fixed window eg.100kb bin widows

Description

Generate UMAP for the final prediction based on fixed window eg.100kb bin widows

Usage

PlotUMAP_fixedwindow(
  query_fn,
  knowledge_fn,
  prediction_result,
  n_component = 30,
  seed = 123,
  ...
)

Arguments

query_fn	File path to query .cg
knowledge_fn	File path to 100bk bins window or reference pattern
prediction_result	Prediction result from PredictCellType
n_component	Number of PCA components to use (Default: 30)
seed	A number for random seed (Default: 123)
...	Additional arguments passed to 'uwot::umap' (e.g., 'n_neighbors', 'metric').

Value

A list of two ggplot2 UMAP object.

MethScope documentation built on Feb. 27, 2026, 1:08 a.m.